View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_43 (Length: 243)
Name: NF18727_low_43
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_43 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 13262694 - 13262458
Alignment:
| Q |
7 |
aaaatcatcaaccacgcttcatggcgaaaacacgcaaaactcgctcacgaatgcaaatccattatcgacagactcagtaacactgacaacagaacaattc |
106 |
Q |
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| T |
13262694 |
aaaatcatcaaccacgcttcatggcgaaaacacgcaaaactcgctcacgaatgcaaatccatcattgacagactcagtaacactgacaacagaacaattc |
13262595 |
T |
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| Q |
107 |
ccggttcaccctccgataccgaaccggaaacgcccggtccgcttcacgatggtggaccggtggaattctcgctaaccgaatccgaatccattcttcttcc |
206 |
Q |
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| T |
13262594 |
ccggttcaccctccgataccgaaccggaaacgcccggtccgcttcacgatggtggaccggtggaattctcgctaaccgaatccgaatccattcttcttcc |
13262495 |
T |
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| Q |
207 |
tctcatcaatgccgctagctccggtgtcagcaaaata |
243 |
Q |
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| T |
13262494 |
tctcatcaatgccgctagctccggcgtcagcaaaata |
13262458 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 28133426 - 28133487
Alignment:
| Q |
5 |
agaaaatcatcaaccacgcttcatggcgaaaacacgcaaaactcgctcacgaatgcaaatcc |
66 |
Q |
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| T |
28133426 |
agaaaatcctcaaaaacgcttcctggcgaaaacacgctaaactcgctcatgagtgtaaatcc |
28133487 |
T |
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