View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_44 (Length: 240)
Name: NF18727_low_44
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32780882 - 32781104
Alignment:
| Q |
1 |
tacaaagattaaattaattcaaagcaatcaagctgtatcacttgtaatagataactggtttattggaattcaaatcccacatgcctccttccttaagata |
100 |
Q |
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| T |
32780882 |
tacaaagattaaattaattcaaagcaatcaagctgtatcacttgtaatagataactggtttattggaattcaaatcccacatgcctccttccttaagata |
32780981 |
T |
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| Q |
101 |
ctcaatataccttgcaaattcaggtctagctgttgttttctttttcctacgaaaatccaagaagttgagaagtggatgactcttcttgctactattacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32780982 |
ctcaatataccttgcaaattcaggtctagctgttgttttctttttcctacgaaaatccaagaagttgagaagtggatgactcttcttgctactattacta |
32781081 |
T |
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| Q |
201 |
ttagccttctttgtagggtttct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
32781082 |
ttagccttctttgtagggtttct |
32781104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 7996463 - 7996341
Alignment:
| Q |
57 |
ggtttattggaattcaaatcccacatgcctccttccttaagatactcaatataccttgcaaattcaggtctagctgttgttttctttttcctacgaaaat |
156 |
Q |
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|||||||| ||||| |||||||||||||||||||||| | |||||||| ||| |||||||||||||| | | ||||| |||||| || || ||||||| |
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| T |
7996463 |
ggtttatttgaattagaatcccacatgcctccttccttcaaatactcaacatatcttgcaaattcaggctttgatgttgctttcttctttctccgaaaat |
7996364 |
T |
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| Q |
157 |
ccaagaagttgagaagtggatga |
179 |
Q |
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| T |
7996363 |
caaagaaattgagaagtggatga |
7996341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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