View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_45 (Length: 238)
Name: NF18727_low_45
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 11545116 - 11544915
Alignment:
| Q |
15 |
caaaggagaaggaccatcaacagccatatttttctcagcattcaaaccatcttcaacaaaattatcagtgccggtaacaatatcaacagagtttttctca |
114 |
Q |
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| T |
11545116 |
caaaggagaaggaccatcaacagccatatttttctcagcattcaaaccatcttcaacagaattatcagagccggtaacaatatcaacagagtttttctca |
11545017 |
T |
|
| Q |
115 |
gaattcaagccatcttcaacatcaccatcaacaatatcatctcccttcttagattttgaactatagtcacaagactttccaaaagtaacaagtttaggag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11545016 |
gaattcaagccatcttcaacatcaccatcaacaatatcatctcc---cttagcttttgaactatagtcacaaggctttccaaaagtaacaagtttaggat |
11544920 |
T |
|
| Q |
215 |
gaaga |
219 |
Q |
| |
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||||| |
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| T |
11544919 |
gaaga |
11544915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 11563435 - 11563636
Alignment:
| Q |
15 |
caaaggagaaggaccatcaacagccatatttttctcagcattcaaaccatcttcaacaaaattatcagtgccggtaacaatatcaacagagtttttctca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11563435 |
caaaggagaaggaccatcaacagccatatttttctcagcattcaaaccatcttcaacagaattatcagagccggtaacaatatcaacagagtttttctca |
11563534 |
T |
|
| Q |
115 |
gaattcaagccatcttcaacatcaccatcaacaatatcatctcccttcttagattttgaactatagtcacaagactttccaaaagtaacaagtttaggag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11563535 |
gaattcaagccatcttcaacatcaccatcaacaatatcatctcc---cttagcttttgaactatagtcacaaggctttccaaaagtaacaagtttaggat |
11563631 |
T |
|
| Q |
215 |
gaaga |
219 |
Q |
| |
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||||| |
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| T |
11563632 |
gaaga |
11563636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 16799239 - 16799064
Alignment:
| Q |
48 |
ctcagcattcaaaccatcttcaacaaaattatcagtgccggtaacaatatcaacagagtttttctcagaattcaagccatcttcaacatcaccatcaaca |
147 |
Q |
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||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16799239 |
ctcagcattcaaaccatcttcaacagaattattagagccggtaacaatatcaacagagtttttctcagaattcaagccatcttcaacatcaccatcaaca |
16799140 |
T |
|
| Q |
148 |
atatcatctcccttcttagattttgaactatagtcacaagactttccaaaagtaacaagtttaggaggaagatgat |
223 |
Q |
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| T |
16799139 |
atatcatctccctacttagcttttgaactatagtcacaagactttccaaaagtaacaagtttaggaggaagatgat |
16799064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 16799662 - 16799623
Alignment:
| Q |
16 |
aaaggagaaggaccatcaacagccatatttttctcagcat |
55 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| |
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| T |
16799662 |
aaaggagaaggaccatcaacagccatacttttctcagcat |
16799623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 39191113 - 39191225
Alignment:
| Q |
92 |
caatatcaacagagtttttctcagaattcaagccatcttcaacatcaccatcaacaatatcatctcccttcttagattttgaactatagtcacaagactt |
191 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39191113 |
caatatgaacagagtttttctcagaattcaagccatcttcaacaccaccatcagcaatatcatctcccttcttagcttttgaactatagtcacaagactt |
39191212 |
T |
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| Q |
192 |
tccaaaagtaaca |
204 |
Q |
| |
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||||||||||||| |
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| T |
39191213 |
tccaaaagtaaca |
39191225 |
T |
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