View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_5 (Length: 534)
Name: NF18727_low_5
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 6040047 - 6040574
Alignment:
| Q |
1 |
tttcatgattatatccataatattgttcttcatcacacagcatatcttcggatcctgaatcagaatcatccatgttattgtgaacatcttccaaactcat |
100 |
Q |
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||||||||| |||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6040047 |
tttcatgatcatatacgtaatattgttcttcatcacactgcatatcttcggatcctgaatcagaatcatccgtgttattgtgaacatcttccaaactcat |
6040146 |
T |
|
| Q |
101 |
ttcttcatgagaccaactagtttgttgatctttatctacatcttcatttttctttagatcttcaacctctttcataaatcctacttcgatgccatcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
6040147 |
ttcttcatgagaccaactagtttgttgatcttcctctacatcttcatttttctttagatcttcaacctctttcataaatcccacttctatgccatcattt |
6040246 |
T |
|
| Q |
201 |
tcaattgtagacttgatgatatccccatgatcctcaacctcttcgagaaaatcgatttttccaattacttcttcacctgttgattctgcatcctttttct |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6040247 |
tcaattgtagacttgatgatatcttcatgatcctcaacctcttcgagaaaatcgatttttccaattacttcttcacctgttgattctgcatcctttttct |
6040346 |
T |
|
| Q |
301 |
cattatcatagatttcaatgaagaaatccatggcagtttcatcatatgaaggttttgaatcaaaggcactcttctcaacatcagagtccttcatttctgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6040347 |
cattatcatagatttcaatgaagaaatccatggcagtttcatcatatgaaggttttgaatcaaaggcactcttctcaacatcagagtccttcatttctgt |
6040446 |
T |
|
| Q |
401 |
ctcaccagtagccttcaatcttcgactacgagggctcagagcttcgagcttcacacgcttcaagacgcgcctcctcgaagacataaaagtcttcaaagga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6040447 |
ctcaccagtagccttcaatcttcgactacgagggctaagagcttcgagcttcacgcgctttaagacgcgcctcctcgaagacataaaagtcttcaaagga |
6040546 |
T |
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| Q |
501 |
ggcaaatcagcatgatgatgatgtccat |
528 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
6040547 |
ggcaaatcagcatgatgatgatgaccat |
6040574 |
T |
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