View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18727_low_6 (Length: 518)
Name: NF18727_low_6
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 4 - 493
Target Start/End: Complemental strand, 4776899 - 4776410
Alignment:
| Q |
4 |
ggagaattagcatactcctctttcacctcaagtggtagttcaaaaaactcacgccaaacttccctagcacgtttcatcaagtcatgactaactccatggt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776899 |
ggagaattagcatactcctctttcacctcaagtggtagttcaaaaaactcacgccaaacttccctagcacgtttcatcaagtcatgactaactccatggt |
4776800 |
T |
|
| Q |
104 |
tcaaaacttggaagaatccccattctctacacgcctccgagacgcgctttagcgtctcctcacggagcttctcgtcctcgccgtataagtgttgtaaatc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776799 |
tcaaaacttggaagaatccccattctctacacgcctccgagacgcgctttagcgtctcctcgcggagcttctcgtcctcgccgtataagtgttgtaaatc |
4776700 |
T |
|
| Q |
204 |
aatgactggaatattgatgttattcttgttgttttcatcatgagcatgatgaaaagtttggctagtgaaagagtttgttttggtaggtctttgggatttt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776699 |
aatgactggaatattgatgttattcttgttgttttcatcatgaacatgatgaaaagtttggctagtgaaagagtttgttttggtaggtctttgggatttt |
4776600 |
T |
|
| Q |
304 |
ggtttgatgaaatgttgagggattgagcttatgccactttcagctaaggcttggactctaatcactggctctggccaaccttcactagccatcatttttt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776599 |
ggtttgatgaaatgttgagggattgagcttatgccactttcagctaaggcttggactctaatcactggctctggccaaccttcactagccatcatttttt |
4776500 |
T |
|
| Q |
404 |
gtgtgttttgcactagctttttaggttgttatataagaatatttaatgctcttaagaaaaataaaagagatatattactggaggggacct |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776499 |
gtgtgttttgcactagctttttaggttgttatataagaatatttaatgctcttaagaaaaataaaagagatatattactggaggggacct |
4776410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 25179355 - 25179503
Alignment:
| Q |
4 |
ggagaattagcatactcctctttcacctcaagtggtagttcaaaaaactcacgccaaacttccctagcacgtttcatcaagtcatgactaactccatggt |
103 |
Q |
| |
|
||||| |||||| | || || ||||| |||||||| || | ||| |||||||||||||||||| |||||| || |||||| |||||||||| ||||| | |
|
|
| T |
25179355 |
ggagagttagcaaattcttccttcacttcaagtggaaggttaaagaactcacgccaaacttccttagcactttccatcaactcatgactaatcccatgat |
25179454 |
T |
|
| Q |
104 |
tcaaaacttggaagaatccccattctctacacgcctccgagacgcgctt |
152 |
Q |
| |
|
||| ||||||||||| ||||| || | ||| ||||||||||| ||||| |
|
|
| T |
25179455 |
tcaccacttggaagaacccccactcccgacatgcctccgagacacgctt |
25179503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 25179645 - 25179685
Alignment:
| Q |
321 |
agggattgagcttatgccactttcagctaaggcttggactc |
361 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
25179645 |
agggattgaggttaggccactttcagctaaggcttggactc |
25179685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University