View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_8 (Length: 446)
Name: NF18727_low_8
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 10141059 - 10141243
Alignment:
| Q |
16 |
attgataactttagaaaagatttgtttactatgaaattatatcaacctaaaatatatctaaaatattttgtttactgaagnnnnnnnttgttttagattc |
115 |
Q |
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| T |
10141059 |
attgataactttagattatatttgtttaatatgaaattatatcaacccaaaatatatctaaaatattttgtttactaaagaaaaatattattttagattc |
10141158 |
T |
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| Q |
116 |
ttttacgaagaaagtttaggttagttgaactctgagactcatcatagacagattaaggcctcaaagttcaacgaacgtttacaaa |
200 |
Q |
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| T |
10141159 |
ttttgcgaagaaagtttacgttagttggacttagagactcatcatagacagattaaggcctcaaagttcaacgaacgtttacaaa |
10141243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 249 - 373
Target Start/End: Original strand, 10143627 - 10143757
Alignment:
| Q |
249 |
ttaagaaaataaatcgtgaaagtacaaagattggaccgggtttgaaacatctcctacccaaacccggttagggt------tagccaaatgggctagacaa |
342 |
Q |
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| T |
10143627 |
ttaagaaaataaatcgtgaaagtacaaagattgggccgggtttggaacatgtcctacccaaacccggttagggtcagtggtagccaaatgggctagacaa |
10143726 |
T |
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| Q |
343 |
tgggccactgagttaccttttctcttaacat |
373 |
Q |
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| T |
10143727 |
tgggccactgagttaccttttctcttaacat |
10143757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 10143178 - 10143210
Alignment:
| Q |
225 |
ttttgaatataaactgatcatatattaagaaaa |
257 |
Q |
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| T |
10143178 |
tttttaatataaactgatcatatattaagaaaa |
10143210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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