View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_high_1 (Length: 589)
Name: NF18728_high_1
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 27 - 542
Target Start/End: Original strand, 42018986 - 42019519
Alignment:
| Q |
27 |
tttcaacagatgatcgtcgtaataattctcccccatatcgtcacccagaaaactttcaccatcatattcccacatgcaatc----------attgtccaa |
116 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
42018986 |
tttcaacagatgatcgttgaaataattctcccccatatcgtcacccagaaaactttcagcatcatattcccacatgcaatccttcacaatcattgtccaa |
42019085 |
T |
|
| Q |
117 |
gtcannnnnnnnaccattgttatcatcaaacatccctttaaaacatgtcaaaataagtttatcaagcaatttttgaaa-------agatgtttttcaatt |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
42019086 |
gtcattttttttaccattgttatcatcaaacatccctttaaaacatgccaaaataagtttatcaagcaatttttaaaatttttaaagatgtttttcaatt |
42019185 |
T |
|
| Q |
210 |
gatattggcatatagttttttaatttacttaaaaagatttgtcttataaaagataggttgaacattcttacagtatattatttcaaaacagaaaatgcaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42019186 |
aatattggcatatagttttttaatttacttaaaaagatttgtcttataaaagataggttgaacattcttacagtatattatttcaaaacagaaaatgcaa |
42019285 |
T |
|
| Q |
310 |
ctcagtcaaacaagcactttgataccaagtaccatcatatggttgttccaggtggtaaaagactgcagcaacttaactggtcacaacaatcaataaatgg |
409 |
Q |
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| || | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42019286 |
cacatt--aacaagcactttgataccaagtaccatcatatggttgttccaagtggtaaaagactgcagcaacttaactggtcacaacaatcaataaatgg |
42019383 |
T |
|
| Q |
410 |
aagcatttgattctca---atgacccatagtacatagaaggaagaaccttattcataaaataatacagaggaaggaaccttgcatgattaggtggtgaca |
506 |
Q |
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| T |
42019384 |
aagcatttgattctcaattatcacccatagaacatagaaggaagaaccttattcataaaataatacagaggaaggaactttgcatgattaggtggtgaca |
42019483 |
T |
|
| Q |
507 |
aacaactcaatgttagagaagatgagacatgtgacc |
542 |
Q |
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| T |
42019484 |
aacaacccaatgttagagaagatgagacatgtgacc |
42019519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 1252205 - 1252661
Alignment:
| Q |
19 |
gtggacgatttcaacagatgatcgtcgtaataattctcccccatatcgtcacccagaaaactttcaccatcatattcccacatgcaatcattgtccaagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252205 |
gtggacgatttcaacagatgatcgtcgtaataattctcccccatatcgtcacccagaaaactttcaccatcatattcccacatgcaatcattgtccaagt |
1252304 |
T |
|
| Q |
119 |
cannnnnnnnaccattgttatcatcaaacatccctttaaaacatgtcaaaataagtttatcaagcaatttttgaaaagatgtttttcaattgatattggc |
218 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
1252305 |
cattttttttaccattgttatcatcaaacatccctttaaaacatgtcaaaataagtttatcaagcaatttttaaaaagatgtttttcaattaatattggc |
1252404 |
T |
|
| Q |
219 |
atatagttttttaatttacttaaaaagatttgtcttataaaagataggttgaacattcttacagtatattatttcaaaacagaaaatgcaactcagtcaa |
318 |
Q |
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||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1252405 |
atatagttttttaatttacttcaa--gatttgtcttgtaaaagataggttgaacattcttacagtatattatttcaaaacagaaaatgcaacacagtcaa |
1252502 |
T |
|
| Q |
319 |
acaagcactttgataccaagtaccatcatatggttgttccaggtggtaaaagactgcagcaacttaactggtcacaacaatcaataaatggaagcatttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252503 |
acaagcactttgataccaagtaccatcatatggttgttccaggtggtaaaagactgcagcaacttaactggtcacaacaatcaataaatggaagcatttg |
1252602 |
T |
|
| Q |
419 |
attctca---atgacccatagtacatagaaggaagaacc-ttattcataaaataataca |
473 |
Q |
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||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
1252603 |
attctcaattatcacccatagaacatagaaggaagaacctttattcataaaataataca |
1252661 |
T |
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