View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_high_12 (Length: 336)
Name: NF18728_high_12
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 2469631 - 2469949
Alignment:
| Q |
1 |
ttgtgttatttatttctggtatgaattgggcatatgaaaagtgaacatggagcaatataatgaacactattggctacatgtttgaaaatgacttacaata |
100 |
Q |
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| T |
2469631 |
ttgtgttatttttttctggtatgaattgggcatatgaaaagtgaacatggagcaatataatgaacactattggctacatgtttgaaaatgacttacaata |
2469730 |
T |
|
| Q |
101 |
ttgtttttcaacgccttttgaccaaccatataacagttttatcataatacaacatcaaattattttgggaacacagttttaatcatctgcaaaaagaatg |
200 |
Q |
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| T |
2469731 |
ttgtttttcaacgccttttgaccaaccatataacagttttatcataatacaacatcaaattcttttgggaacacaattttaatcatctgcaaaaagaatg |
2469830 |
T |
|
| Q |
201 |
aattgatttctttgcgatgcaaagatgtctttagtttatccaaattctatgttttctagaaatattatcactttatttctactccttcctttggatttat |
300 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2469831 |
aattgatttctttgtgatgcaaagatgtctttcgtttaaccagattctatgttttctagaaatattatcactttatttctactccttcctttggatttat |
2469930 |
T |
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| Q |
301 |
attttattgtatttgaaac |
319 |
Q |
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||||||||||||||||||| |
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| T |
2469931 |
attttattgtatttgaaac |
2469949 |
T |
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