View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18728_high_2 (Length: 553)
Name: NF18728_high_2
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_high_2 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 16700614 - 16700060
Alignment:
| Q |
1 |
ttaatagtttgtttataatat--tttgttggattatgtgatattaatatgatggttatgtaaaacttgtggattattgaacaaagttacttaagaatttt |
98 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16700614 |
ttaatagtttgtttataatatattttgttggattatgtgatattaatatgatggttatgtaaaacttttggattattgaacaaagttacttaagaatttt |
16700515 |
T |
|
| Q |
99 |
tgtttgcactaaaccatgtcaagattgaagttcaagctacagaagtttcccaacaagactctgtaacagttactcaagaaaacatggcaaccgtttcaca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16700514 |
tgtttgcactaaaccatgtcaagattgaagttcaagctacagaagtttcccaacaagactctgtaacagttactcaagaaaacatggcaaccgtttcaca |
16700415 |
T |
|
| Q |
199 |
tctaaccaaaaagccattgaagcaaaatgataaagcactaaaaccgtgctggaaccctcctgctccactcagtgagttttcaccattcatgattactctt |
298 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16700414 |
tcttaccaaaaagccattgaagcaaaatgataaagcactaaaaccgtgctggaaccctcctgctccactcagtaagttttcaccattcatgattactctt |
16700315 |
T |
|
| Q |
299 |
gcttatgttgcttattgatcattgaagcagtatgaagtagactcaactaaggttttaacttttaagtcatagtcacagtcatggttttaaatgcggttga |
398 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
16700314 |
gcatatgttgcttattgatcattgaagcagtatgaagtagacacaactaaggttttaactttataatcatagtcacagtcatggttttaaatgcggttgt |
16700215 |
T |
|
| Q |
399 |
ggtctcggttgcagttacgtgtcaaccgttattgtggtaaaatgtagatgacacgtttgaaattgtggttgtcgaaatgtcgtagatacttaaaaatctt |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
16700214 |
ggtctcggttgcagttacgtgtcaaccgttattgtggtaaaatgtagatgacacatttgaaattgtggttgtcgaaatgttgtagatacttaaaaatgtt |
16700115 |
T |
|
| Q |
499 |
ttatattatggcggttgtggaccgcaatttaaaaccatgatcatagtatactgat |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16700114 |
ttatattatggcggttgtggaccgcaatttaaaaccatgatcatagtatactgat |
16700060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 537
Target Start/End: Complemental strand, 38917451 - 38917423
Alignment:
| Q |
509 |
gcggttgtggaccgcaatttaaaaccatg |
537 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38917451 |
gcggttgtggaccgcaatttaaaaccatg |
38917423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University