View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18728_high_20 (Length: 252)

Name: NF18728_high_20
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18728_high_20
NF18728_high_20
[»] chr5 (2 HSPs)
chr5 (22-241)||(12616414-12616629)
chr5 (127-241)||(34946014-34946128)
[»] chr3 (2 HSPs)
chr3 (132-221)||(32809939-32810028)
chr3 (160-219)||(2453645-2453705)
[»] chr8 (1 HSPs)
chr8 (155-210)||(29775735-29775790)
[»] chr7 (1 HSPs)
chr7 (155-208)||(31255759-31255811)
[»] chr4 (3 HSPs)
chr4 (134-207)||(31858402-31858474)
chr4 (155-219)||(35345268-35345332)
chr4 (161-241)||(51108615-51108694)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 12616629 - 12616414
Alignment:
Q  22 catacaatcgaatcaatatttctaaataaaattgcaatgaggaatttaaaattgggatctagctaaggattatagttattttatagatcgcagacaaaac 121  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||    | |||||||||||||||||    
T  12616629 catacaatcgaatcaatatttttaaataaaattgcaatgaagaatttaaaattgagatctagttaaggattatagtt----tgtagatcgcagacaaaac 12616534  T
Q  122 ctcatttttcttttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaagg 221  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||| ||||||||||||||||| |||||||     
T  12616533 ctcatttttcttttctctttgaaggatttgaaataagaattagtgcagttaaacctaaaaacttaattgtttagtgtccaatatattgaataaaaaaagt 12616434  T
Q  222 atattatacaacatcatata 241  Q
    ||||||||||||||||||||    
T  12616433 atattatacaacatcatata 12616414  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 34946014 - 34946128
Alignment:
Q  127 ttttcttttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaaggatatt 226  Q
    |||| |||||||||| | |||| |||  |||| |||| |||||||||||||| ||| ||||  |||||| ||| |||||||||| | |||||||   |||    
T  34946014 tttttttttctcttttagggatatgagttaaggattagtgcaattaaacctaaaaatttaagagtttaaggtctaatatattgagtaaaaaaagttcatt 34946113  T
Q  227 atacaacatcatata 241  Q
    ||| |||||||||||    
T  34946114 atataacatcatata 34946128  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 32809939 - 32810028
Alignment:
Q  132 ttttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaagg 221  Q
    |||||||||| ||||||||||  |||| | || |||||||||||||| |||||||| || |||   ||||||||||||| | ||||||||    
T  32809939 ttttctcttttaaggatttgagttaaggaatagtgcaattaaacctaaaaacttaagtgattatgatccaatatattgagtgaaaaaagg 32810028  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 2453645 - 2453705
Alignment:
Q  160 attaatgcaattaaacctagaaacttaaatgtttaatg-tccaatatattgaattaaaaaa 219  Q
    |||| |||||||||||||||||| |||| ||||||||| |||| |||||||  ||||||||    
T  2453645 attattgcaattaaacctagaaatttaagtgtttaatgttccactatattgttttaaaaaa 2453705  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 29775735 - 29775790
Alignment:
Q  155 taagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattga 210  Q
    ||||||||||| |||||||||||| ||||| ||||||||||   ||||||||||||    
T  29775735 taagaattaattcaattaaacctaaaaactaaaatgtttaagacccaatatattga 29775790  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 31255759 - 31255811
Alignment:
Q  155 taagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatatt 208  Q
    |||| |||| || |||||||||||||||||| ||||||||| ||||||||||||    
T  31255759 taaggattagtgtaattaaacctagaaactt-aatgtttaaggtccaatatatt 31255811  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 31858402 - 31858474
Alignment:
Q  134 ttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatat 207  Q
    |||||||| ||||||||||  |||  |||| ||||||||||| ||||||||| ||| ||||| |||||||||||    
T  31858402 ttctcttttaaggatttgagttaaatattagtgcaattaaacttagaaactt-aatctttaaggtccaatatat 31858474  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 35345332 - 35345268
Alignment:
Q  155 taagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaa 219  Q
    ||||||||| || ||||||||||| |||||||||||||| |  ||||  ||||||||| ||||||    
T  35345332 taagaattagtgtaattaaacctaaaaacttaaatgtttgagttccacaatattgaatcaaaaaa 35345268  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 51108694 - 51108615
Alignment:
Q  161 ttaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaaggatattatacaacatcatata 241  Q
    ||||||||||||||| |||||| |||| ||||||| ||  |||||||||| | || || |  |||||||||||||||||||    
T  51108694 ttaatgcaattaaacttagaaaattaagtgtttaaagttaaatatattgagt-aataatgtttattatacaacatcatata 51108615  T

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