View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_high_22 (Length: 239)
Name: NF18728_high_22
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 13898521 - 13898614
Alignment:
| Q |
1 |
tgcagccatgtttgaagtgtagcatgaagatgtgaggttgaagttgaaagtgttagttttggtcatgattaaagtaccttgtaattgaactgtg |
94 |
Q |
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| T |
13898521 |
tgcagccatgtttgaagtgtagcatgaagatgtgaggttgaagttgaaagtgttagttttggtcatgattaaagtaccttgtaattgaactgtg |
13898614 |
T |
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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 13898668 - 13898750
Alignment:
| Q |
148 |
agaatagaattcttggtacaatattggtttcagtgtgaaataggaaatataaacgtgatgacataatttgtggtatgatgatg |
230 |
Q |
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| T |
13898668 |
agaatagaattcttggtacaatattggtttcagtgtgaaataggaaatataaacgtgatgacataatttgtggtatgatgatg |
13898750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 13886683 - 13886616
Alignment:
| Q |
1 |
tgcagccatgtttgaagtgtagcatgaagatgtgaggttgaagttgaaagtgttagttttggtcatga |
68 |
Q |
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| T |
13886683 |
tgcaaccatgttggaggtgtagcatgaaaatgtgaggttgaaattggaagtgttagttttggtcatga |
13886616 |
T |
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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 1035796 - 1035858
Alignment:
| Q |
156 |
attcttggtacaatattggtttcagtgtgaaataggaaatataaacgtgatgacataatttgt |
218 |
Q |
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| T |
1035796 |
attcttggtacaatattggtttcagtttgaaataggaaatataaacgtgatgacataatttgt |
1035858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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