View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18728_high_26 (Length: 214)

Name: NF18728_high_26
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18728_high_26
NF18728_high_26
[»] chr3 (1 HSPs)
chr3 (22-199)||(8523316-8523493)
[»] chr2 (3 HSPs)
chr2 (18-199)||(12248670-12248851)
chr2 (79-199)||(11994139-11994259)
chr2 (142-194)||(32681739-32681791)
[»] chr5 (7 HSPs)
chr5 (18-187)||(42117983-42118152)
chr5 (19-193)||(41713260-41713434)
chr5 (32-199)||(42129093-42129260)
chr5 (19-125)||(41571722-41571828)
chr5 (19-193)||(34232505-34232679)
chr5 (32-193)||(34240261-34240422)
chr5 (32-195)||(42123712-42123875)
[»] chr4 (1 HSPs)
chr4 (32-195)||(11118357-11118520)
[»] chr6 (2 HSPs)
chr6 (32-195)||(24141043-24141206)
chr6 (32-192)||(25522747-25522907)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 8523493 - 8523316
Alignment:
Q  22 tgacaggcaccattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaacttttc 121  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||    
T  8523493 tgacaggcaccattccacaatgtcttgctaatttatcataccttgaagttttggatctacaaatgaacaaatttcatggaactttgccaagtaacttttc 8523394  T
Q  122 aaaggaaagttcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtctctctg 199  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8523393 aaaagaaagtgaacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtctctctg 8523316  T

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Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 12248851 - 12248670
Alignment:
Q  18 caattgacaggcaccattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaact 117  Q
    ||||||||||| | ||||||||||||||||||| ||||||||  |||| |||||||| || |||||| ||||| ||||||||||||||||||||||||||    
T  12248851 caattgacaggtatcattccacaatgtcttgctgatttatcatcccttcaagttttgaatctacaaatgaacaaatttcatggcactttgccaagtaact 12248752  T
Q  118 tttcaaaggaaagttcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtctctctg 199  Q
    | ||||||   ||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||    
T  12248751 tctcaaagatgagtgcacttgagactctgaatctttatggcaaccaattagaaggccatattcctagatccttgtctctctg 12248670  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 11994139 - 11994259
Alignment:
Q  79 tacaaaggaacagatttcatggcactttgccaagtaacttttcaaaggaaagttcacttgagactctgaatctctatggcaaccaattagaaggtcatat 178  Q
    |||||| ||||| || |||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  11994139 tacaaatgaacacatgtcatggcactttgccaagtaacttctcaaaggagagtgcacttgagactctgaatctctatggcaaccaattagaaggccatat 11994238  T
Q  179 tcctaaatccttgtctctctg 199  Q
    ||||| ||||||  |||||||    
T  11994239 tcctagatccttaactctctg 11994259  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 32681739 - 32681791
Alignment:
Q  142 ctctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtct 194  Q
    ||||||| |||||||||||||| || ||||| ||| |||| ||||||||||||    
T  32681739 ctctgaacctctatggcaaccacttggaaggccattttccgaaatccttgtct 32681791  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 42118152 - 42117983
Alignment:
Q  18 caattgacaggcaccattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaact 117  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||| |||| ||| |||||| |||| ||||||||||||||||    
T  42118152 caattgacagacatcattccacaatgtcttgctaattcatcaatccttcaagttttggatttgcaaatgaatagattttatggaactttgccaagtaact 42118053  T
Q  118 tttcaaaggaaagttcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatc 187  Q
    ||||| ||||  ||   ||| ||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  42118052 tttcagaggactgtgtgcttcagactctaaatctccatggcaaccaattagaaggtcagattcctaaatc 42117983  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 41713260 - 41713434
Alignment:
Q  19 aattgacaggcaccattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaactt 118  Q
    ||||||| || ||||||||||||||||||||||||||||||  |||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||    
T  41713260 aattgactggtaccattccacaatgtcttgctaatttatcataccttgaagttttggatctacaaatgaacaaattttatggcactttgccaagtaactt 41713359  T
Q  119 ttcaaaggaaagttcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtc 193  Q
    ||||||||| |||   ||| | ||||| ||||||||||||||| |||||||||| ||| | ||||| || |||||    
T  41713360 ttcaaaggacagtgagcttcatactctaaatctctatggcaacaaattagaaggccatttgcctaattctttgtc 41713434  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 199
Target Start/End: Complemental strand, 42129260 - 42129093
Alignment:
Q  32 cattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaacttttcaaaggaaagt 131  Q
    ||||||||||||||||||||||| |||  ||||| ||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||| || |  ||    
T  42129260 cattccacaatgtcttgctaattcatcgttccttcaagttttggatttgcaaatgaatagattttatggaactttgccaagtaacttttcagagtactgt 42129161  T
Q  132 tcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtctctctg 199  Q
       ||| ||||||| |||||| |||||||| |||||||||||||| |||| |||||||||||||||||    
T  42129160 gagcttcagactctaaatctccatggcaacaaattagaaggtcattttccaaaatccttgtctctctg 42129093  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 41571722 - 41571828
Alignment:
Q  19 aattgacaggcaccattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaactt 118  Q
    |||||||||||||||||||||| |||||||| || ||||||  |||| |||||||||||||||||| ||||| |||| |||||||||| |||||||||||    
T  41571722 aattgacaggcaccattccacattgtcttgcaaacttatcatcccttcaagttttggatttacaaatgaacaaattttatggcactttaccaagtaactt 41571821  T
Q  119 ttcaaag 125  Q
    |||||||    
T  41571822 ttcaaag 41571828  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 34232505 - 34232679
Alignment:
Q  19 aattgacaggcaccattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaactt 118  Q
    ||||||| || | ||||||||||| ||||||||||||||||  |||  |||| |||||| |||||| ||| |||||| ||||| ||||||||||||||||    
T  34232505 aattgaccggtatcattccacaatatcttgctaatttatcatccctacaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaactt 34232604  T
Q  119 ttcaaaggaaagttcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtc 193  Q
     |||||| | |||   |||  || |||||||||| ||||||||||  ||||||||||| | |||||||| |||||    
T  34232605 ctcaaagtacagtgaccttcggagtctgaatctcaatggcaaccatatagaaggtcatttgcctaaatctttgtc 34232679  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 34240261 - 34240422
Alignment:
Q  32 cattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaacttttcaaaggaaagt 131  Q
    ||||||||||||||||||||||||| ||  |||| || |||||||| |||||| |||||  ||| ||||||||||||| | |||||||||||||   |||    
T  34240261 cattccacaatgtcttgctaatttaccatcccttcaaattttggatctacaaatgaacaacttttatggcactttgcctaataacttttcaaagtccagt 34240360  T
Q  132 tcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtc 193  Q
      ||||   |||||||||||| ||| |||||||||||||||  |  |||||||||| |||||    
T  34240361 aaacttattactctgaatctcaatgacaaccaattagaagggtactttcctaaatctttgtc 34240422  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 42123875 - 42123712
Alignment:
Q  32 cattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaacttttcaaaggaaagt 131  Q
    ||||||||||||| ||||| | | | ||  |||| |||||||| || |||||| |||||  ||| |||| |||||||||||||||||||||||| |  ||    
T  42123875 cattccacaatgttttgctgaatcaccatcccttcaagttttgaatctacaaatgaacatgttttatggtactttgccaagtaacttttcaaagaactgt 42123776  T
Q  132 tcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtctc 195  Q
        |||  |||||||| ||||| |||||||| |||||||| ||| |||| |||||||||||||    
T  42123775 agtattgtcactctgaacctctacggcaaccagttagaaggccattttccaaaatccttgtctc 42123712  T

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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 11118520 - 11118357
Alignment:
Q  32 cattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaacttttcaaaggaaagt 131  Q
    ||||||||||||||||||| | | | || ||||| | |||||| || |||||| ||||| |||||||||||||||||| |||||||||||||||||||||    
T  11118520 cattccacaatgtcttgctgaatcaccattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttcaaaggaaagt 11118421  T
Q  132 tcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtctc 195  Q
        ||| | ||||||| |||||||||||||| |||||||| ||| |||| |||||||||||||    
T  11118420 cgtattgtgtctctgaacctctatggcaaccagttagaaggccattttccaaaatccttgtctc 11118357  T

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Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 24141206 - 24141043
Alignment:
Q  32 cattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaacttttcaaaggaaagt 131  Q
    |||||||||||||||| || ||| | ||  ||||  ||||||| || ||||||  |||| |||||||||||||||||||||||||||||||||||| | |    
T  24141206 cattccacaatgtctttctgattcaccatcccttcgagttttgaatctacaaatcaacacatttcatggcactttgccaagtaacttttcaaaggacaat 24141107  T
Q  132 tcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgtctc 195  Q
      | |||| ||||||||| ||||||| ||| | |||||||| ||| |||| |||||||||||||    
T  24141106 ggaattgacactctgaatttctatggtaacaagttagaaggccattttccgaaatccttgtctc 24141043  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 25522747 - 25522907
Alignment:
Q  32 cattccacaatgtcttgctaatttatcaatccttgaagttttggatttacaaaggaacagatttcatggcactttgccaagtaacttttcaaaggaaagt 131  Q
    ||||||||||||||||||| | | | ||  |||| |||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||| | |||    
T  25522747 cattccacaatgtcttgctgaatcaacatcccttcaagttttgaatctacaaatgaatagatttcatggcactttgccaagtaacttttcaaagcatagt 25522846  T
Q  132 tcacttgagactctgaatctctatggcaaccaattagaaggtcatattcctaaatccttgt 192  Q
      | |||   |||| || |||||||||||| | |||||||||| | |||| ||||| ||||    
T  25522847 aaaattgtctctctaaacctctatggcaacgagttagaaggtcgttttccgaaatctttgt 25522907  T

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