View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18728_high_3 (Length: 494)
Name: NF18728_high_3
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 40423440 - 40423871
Alignment:
| Q |
18 |
tcctacacccatatactttcatatcactgtttatgaagtaaaatggtcaattggtaatgtctatatgcagtggcaagcgaaccatacaggttaggccaga |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40423440 |
tcctacacccatatactttcatataactgtttatgaagtaaaatggtcaattggtaatgtctatatgcagtggcaagcgaaccatacaggttaggccaga |
40423539 |
T |
|
| Q |
118 |
agctgcacgttttgaagagttccaggatgtggactcaccggctttagctgataatgccgacccacccgtattagctacggatgtggatctaccgatccta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40423540 |
agctgcacgttttgaagagttccaggatgtggactcaccggctttagctgataatgcagacccacccgtattagctacggatgtggatctacctatccta |
40423639 |
T |
|
| Q |
218 |
gctaatgatttagactctccgatcttagccataactaataatgcagacccaccggtcttagctatggatttggacccactggtcctagctaatgatgctg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40423640 |
gctaatgatttagactctccgatcttagccataactaataatgcagacccaccggtcttagctatggatttggacccactggtcctagctaatgatgctg |
40423739 |
T |
|
| Q |
318 |
actctccagtcttggccttaactaataatgcagacccaccagtcttagctatggatgtggacccaccggtcttggctaatgatgtaggctcaccggtctt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40423740 |
actctccagtcttggccttaactaataatgcagacccaccagtcttagctatggatgtggacccaccggtcttggctaatgatgcaggctcaccggtctt |
40423839 |
T |
|
| Q |
418 |
agctaatgatgtagactcgccagtcttagcta |
449 |
Q |
| |
|
|||||||||||||| ||| || |||||||||| |
|
|
| T |
40423840 |
agctaatgatgtaggctcaccggtcttagcta |
40423871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 381 - 483
Target Start/End: Original strand, 40423830 - 40423932
Alignment:
| Q |
381 |
caccggtcttggctaatgatgtaggctcaccggtcttagctaatgatgtagactcgccagtcttagctatggattcagatccaccaatcatggctattga |
480 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40423830 |
caccggtcttagctaatgatgtaggctcaccggtcttagctaatgatgtagactcgccagtcttagctatggattcagatccaccaatcatggctattga |
40423929 |
T |
|
| Q |
481 |
tga |
483 |
Q |
| |
|
||| |
|
|
| T |
40423930 |
tga |
40423932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 40423815 - 40423898
Alignment:
| Q |
339 |
ctaataatgcagacccaccagtcttagctatggatgtggacccaccggtcttggctaatgatgtaggctcaccggtcttagcta |
422 |
Q |
| |
|
||||| |||||| | |||| |||||||||| ||||| | | |||||||||| ||||||||||||| ||| || |||||||||| |
|
|
| T |
40423815 |
ctaatgatgcaggctcaccggtcttagctaatgatgtaggctcaccggtcttagctaatgatgtagactcgccagtcttagcta |
40423898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University