View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_high_4 (Length: 487)
Name: NF18728_high_4
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 26454870 - 26455329
Alignment:
| Q |
18 |
gatacaagcttctttgttcgtttgagttgtttcttggctcaccttcagctccttaagattgttttgtgtggatttcatgaacttgcccataatctcatct |
117 |
Q |
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| T |
26454870 |
gatacaagcttctttgttcttttgagttgtttcttggctcaccttcagctccttaagattgttttgtgtggatttcatgaacttgcccataatctcatct |
26454969 |
T |
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| Q |
118 |
aacttaaagggtttcctttaatgctagttgggtggaggtacttgtgtttgatttagaaagttgttgcaccacttcatattatgatgattttttcttgcat |
217 |
Q |
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| T |
26454970 |
aacttaaagggtttcctttaatgctagttgggtggaggtacttgtgtttgatttagaaagttgttgcaccacttcatattatgatgattttttcttgcat |
26455069 |
T |
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| Q |
218 |
taatgtaggtgttaaaaaatgggttgcctctcttgtaatcaccacgtagttggcttcctcagttgtatcttcaacaatgccttccttgttctatttccca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26455070 |
taatgtaggtgttaaaaaatgggttgcctctcttgtaatcaccacgtagttggcttcctcagttgtatcttcaacaatgccttacttgttctatttccca |
26455169 |
T |
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| Q |
318 |
taattacacttccatacttttgtttgttgtgacttggaacaatggcttcctcagttgcatcttcagtttaacttcttggtgagagtcacgaattgggaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455170 |
taattacacttccatacttttgtttgttgtgacttggaacaatggcttcctcagttgcatcttcagtttaacttcttggtgagagtcacgaattgggaag |
26455269 |
T |
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| Q |
418 |
ccatagggttgtggttgaccataaaagttctataggcatccagctccaaaacttcctatg |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455270 |
ccatagggttgtggttgaccataaaagttctataggcatccagctccaaaacttcctatg |
26455329 |
T |
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