View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_high_8 (Length: 376)
Name: NF18728_high_8
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 48 - 350
Target Start/End: Complemental strand, 2469512 - 2469211
Alignment:
| Q |
48 |
agaataaggaaaaacctgaacggcaagagttcgtcaacataatgaaaagttcgacctagagcgacagatatgacagtcattgccctgccaaaaacaagca |
147 |
Q |
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| T |
2469512 |
agaataaggaaaaacctgaacggcaagagttcgtcgacataatgaaaagttcgacctagagcgacagaaatgacagtcattgccctgccaaaaacaagca |
2469413 |
T |
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| Q |
148 |
aattaattgatattattgatttgaagattcttgaataataaaaataaataggttgcacaaaatgattatcatttcctctnnnnnnnnnttattatcattc |
247 |
Q |
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| T |
2469412 |
aattaattgatattattgatttgaagattcttgaataataaaaataaataggttgcacaaaatgattatcatttcctct-aaaaaaaattattatcattc |
2469314 |
T |
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| Q |
248 |
atgatgttgacctctagacacaatataagcctgaagagttttgtacaaatgcatcacattgagtaaatttcagaatgtatgagaagaaaaccattgaagt |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2469313 |
atgatgttgacctctagacacaatataagcctgaagagttttgtacaaatgcatcacattgagtaaatttcagaatgtatgagaagaaaaccattgaagt |
2469214 |
T |
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| Q |
348 |
cta |
350 |
Q |
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||| |
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| T |
2469213 |
cta |
2469211 |
T |
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