View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18728_low_12 (Length: 367)
Name: NF18728_low_12
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 356
Target Start/End: Original strand, 52486212 - 52486562
Alignment:
| Q |
6 |
atttttcaagtttagatatcattttaaaatttcgtttactttaaagatataatttcctgactaacaatttcctgactataatgaattgatatgcatagta |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
52486212 |
atttttcaagtttagatatcattttaaaatttcgtttactttaaagatataatttcctgactaacaatttcattactataatgaattgatatgcatagtg |
52486311 |
T |
|
| Q |
106 |
agtggtattggtatatagctgtggcatctttcattttttgactgagctgaatttcttgtctttggattgaataaaataataggaagatgacttgaagcag |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52486312 |
agtggtattggtatatagctgtggaatctttcattttttgactgagctgaatttcttgtctttggattgaataaaataataggaagatgacttgaagcag |
52486411 |
T |
|
| Q |
206 |
tttcgacaatggggaagcaaaactcctggacatcccgagaactttgagacatatggaattgaagtcaccacaggtcttataaaaataacaatattgataa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52486412 |
tttcgacaatggggaagcaaaactcctggacatcccgagaacttcgagacatatggaattgaagtcaccacaggtcttataaaaataacaatattgataa |
52486511 |
T |
|
| Q |
306 |
taatacgtctctttagttgatgttactgtgagccttttttgcttcttctgt |
356 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52486512 |
taatatgtctctttagttgatgttactgtgagccttttttgcttcttctgt |
52486562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 356
Target Start/End: Complemental strand, 24644561 - 24644210
Alignment:
| Q |
6 |
atttttcaagtttagatatcattttaaaatttcgtttactttaaagatataatttcctgactaacaatttcctgactataatgaattgatatgcatagta |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
24644561 |
atttttcaagtttagatatcattttaaaatttcgtttactttaaagatataatttcctgactaacaatttcattactataatgaattgatatgcatagtg |
24644462 |
T |
|
| Q |
106 |
agtggtattggtatatagctgtggcatctttcattttttgactgagctgaatttcttgtctttggattgaataaaataataggaagatgacttgaagcag |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24644461 |
agtggtattggtatatagctgtggaatctttcattttttgactgagctgaatttcttgtctttggattgaataaaataataggaagatgacttgaagcag |
24644362 |
T |
|
| Q |
206 |
tttcgacaatggggaagcaaaactcctggacatcccgagaactttgagacatatggaattgaagtcaccacaggtcttataaaaataacaatattgataa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24644361 |
tttcgacaatggggaagcaaaactcctggacatcccgagaacttcgagacatatggaattgaagtcaccacaggtcttataaaaataacaatattgataa |
24644262 |
T |
|
| Q |
306 |
taatacgtctctttag-ttgatgttactgtgagccttttttgcttcttctgt |
356 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24644261 |
taatatgtctctttagtttgatgttactgtgagccttttttgcttcttctgt |
24644210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 280
Target Start/End: Complemental strand, 8337120 - 8337037
Alignment:
| Q |
197 |
ttgaagcagtttcgacaatggggaagcaaaactcctggacatcccgagaactttgagacatatggaattgaagtcaccacaggt |
280 |
Q |
| |
|
|||||||| ||||| ||||||| |||| ||| |||||||| || ||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
8337120 |
ttgaagcaatttcgtcaatgggagagcagaacccctggacaccctgagaattttgagactcctggaattgaagtcaccacaggt |
8337037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University