View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_low_13 (Length: 356)
Name: NF18728_low_13
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 8284882 - 8285202
Alignment:
| Q |
20 |
ataggtttaatcacttatctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgtacctct |
119 |
Q |
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| T |
8284882 |
ataggtttaatcacttatctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgtacctct |
8284981 |
T |
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| Q |
120 |
agttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaat |
219 |
Q |
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| T |
8284982 |
agttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaat |
8285081 |
T |
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| Q |
220 |
atgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctccta |
319 |
Q |
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| T |
8285082 |
atgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctccta |
8285181 |
T |
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| Q |
320 |
ctaccattggtgcacctgatg |
340 |
Q |
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| T |
8285182 |
ctaccattggtgcacctgatg |
8285202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 34687150 - 34687276
Alignment:
| Q |
188 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
287 |
Q |
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| T |
34687150 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
34687249 |
T |
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| Q |
288 |
tgagtcagttgatcttgctcctcttcctcc |
317 |
Q |
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| T |
34687250 |
t---tcaactgatcttgctcctctacctcc |
34687276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 91 - 317
Target Start/End: Original strand, 34694979 - 34695205
Alignment:
| Q |
91 |
ttacctcaacagaatgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatc |
190 |
Q |
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||||||||| | ||||||||| | |||||| ||||| |||| | || |||||||||||||| |||| |||||| |||||| ||| ||| | ||||| |
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| T |
34694979 |
ttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatc |
34695078 |
T |
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| Q |
191 |
aagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatga |
290 |
Q |
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| T |
34695079 |
aagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatca |
34695178 |
T |
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| Q |
291 |
gtcagttgatcttgctcctcttcctcc |
317 |
Q |
| |
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||| ||||||||||||||| ||||| |
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| T |
34695179 |
ttcaactgatcttgctcctctccctcc |
34695205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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