View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18728_low_15 (Length: 329)

Name: NF18728_low_15
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18728_low_15
NF18728_low_15
[»] chr4 (1 HSPs)
chr4 (25-316)||(55690600-55690894)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 25 - 316
Target Start/End: Complemental strand, 55690894 - 55690600
Alignment:
Q  25 caaaatttataaatgcaacccatataaggcacaaggagtgcacaaaatattcaaacagattcagcttagcaagccaagaataacccaatgctgacaagaa 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55690894 caaaatttataaatgcaacccatataaggcacaaggagtgcacaaaatattcaaacagattcagcttagcaatccaagaataacccaatgctgacaagaa 55690795  T
Q  125 aaactagaaagagatgccaacatacaacacaccagtaccaatgatgcctactccaatgcttatatcattaacatttggtcataattcatgaactttcatt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55690794 aaactagaaagagatgccaacatacaacacaccagtaccaatgatgcctactccaatgcttatatcattaacatttggtcataattcatgaactttcatt 55690695  T
Q  225 ataata---taatgttctcagttcagtatacatcttttaaagtaaaacaatttagaatcagctgcaatctctcttgtaaattccaaattctgatg 316  Q
    ||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55690694 ataatataataatgttctcggttcagtatacatcttttaaagtaaaacaatttagaatcagctgcaagctctcttgtaaattccaaattctgatg 55690600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University