View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_low_16 (Length: 319)
Name: NF18728_low_16
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 27328576 - 27328861
Alignment:
| Q |
17 |
ttgttgtaggcacttccagagcacaattgtgagactcctttccgctatgcagattttgttacatcagatagatcttgtttttctttagtgattgatggca |
116 |
Q |
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| T |
27328576 |
ttgttgtaggaacttccagagcacaattgtgagacacctttccgctatgcagattttgttacatcagatagatcttgtttttcttcagtgattgatggca |
27328675 |
T |
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| Q |
117 |
acgcgaacaccatcgtttctccgattaacaaagattgtggtgtcactttcctttttctagtccatggagaatgttgcaccaccatcctttctcatgtata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27328676 |
acgcgaacaccatcgtttctccgattaacaaagattgtggtgtcactttcctttttctagtccatggagaatgttgcaccaccatcctttctcatgtata |
27328775 |
T |
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| Q |
217 |
ccaaagggaaactcttccacctcaatgtagtcaagaaatcccacaaatatcaatgatacgtccatcttcggttccaccgcctcctt |
302 |
Q |
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| T |
27328776 |
ccaaagggaaactcttccacctcaatgtagtcaaaaaattccgcaaatatcaatgatgcgtccatcatgggttccaccgcctcctt |
27328861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 302
Target Start/End: Original strand, 27354186 - 27354456
Alignment:
| Q |
30 |
ttccagagcacaattgtgagactcctttccgctatgcagattttgttacatcagatagatcttgtttttctttagtgattgatggcaacgcgaacaccat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
27354186 |
ttccagagcacaattgtgagactcctttccgctatgcagattttgttacatcagatagatcttgtttttcttcggtgattgatggcaacgtgaacaccat |
27354285 |
T |
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| Q |
130 |
cgtttctccgattaacaaagattgtggtgtcactttcctttttctagtccatggagaatgttgcaccaccatcctttctcatgtataccaaagggaaact |
229 |
Q |
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| T |
27354286 |
cgtttctccgattaacaaagattgtggtgtcactttcctttttctagtccatggagaatgttgcaccaccatccattctaatgtataccaaagggaaa-- |
27354383 |
T |
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| Q |
230 |
cttccacctcaatgtagtcaagaaatcccacaaatatcaatgatacgtccatcttcggttccaccgcctcctt |
302 |
Q |
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||||||||||||||||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||||| |
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| T |
27354384 |
cttccacctcaatgtagtcaagaaatcccgcaaataccaaagatacgtccatcatcggttccaccgcctcctt |
27354456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 27306170 - 27306458
Alignment:
| Q |
17 |
ttgttgtaggcacttccagagcacaattgtgagactcctttccgctatgcagattttgttacatcagatagatcttgttttt-ctttagtgattgatggc |
115 |
Q |
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|||| |||||||||||||| || | ||| |||||||| ||| || ||||||||||| | |||| | |||||||||| || ||| ||||||| | ||| |
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| T |
27306170 |
ttgtcgtaggcacttccag--catagttgcgagactcccctccactgtgcagattttgcaagatcacaaagatcttgttcttgcttcagtgattaaaggc |
27306267 |
T |
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| Q |
116 |
aacgcgaacaccatcgtttctccgattaacaaagattgtggtgtcactttcctttttctagtccatggagaatgtt----gcaccaccatcctttctcat |
211 |
Q |
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||| ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
27306268 |
aacacgaacaccatcaattctccgattaacaaagattgaggtatcactttcctttttctagtccatgtagaatgtacgtagcaccaccatcctttctccc |
27306367 |
T |
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| Q |
212 |
gtataccaaagggaaactcttccacctcaatgtagtcaagaaatcccacaaatatcaatgatacgtccatcttcggttccaccgcctcctt |
302 |
Q |
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|| ||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||| | |||||| || |||||||| ||||||| |
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| T |
27306368 |
atacaccaaggggaaacacttccaccttaatgtagtcaagaaatcccataaatatcaatgattcatccatcatcagttccaccacctcctt |
27306458 |
T |
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