View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_low_17 (Length: 287)
Name: NF18728_low_17
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 51806240 - 51806005
Alignment:
| Q |
36 |
ctctaatgaaagagtctctctcaggaaactacccttttgattggggtgtaagcaaagtggataaaccaatctgcgacttcaccggaatcacctgtgacaa |
135 |
Q |
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| T |
51806240 |
ctctaatgaaagagtctctctcaggaaactacccttttgattggggtgtaagcaaagtggataaaccaatctgcgacttcaccggaatcacctgtgacaa |
51806141 |
T |
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| Q |
136 |
caaaggagacatcataagtcttgatttttcaggttggtcatcactttccggaaacttcccatcaaatatttgctcttaccttccaaatttacgtgtccta |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51806140 |
caaaggagacatcataagtcttgatttttcaggttggtcatcactttccggaaacttcccgtcaaatatttgctcttaccttccaaatttacgtgtccta |
51806041 |
T |
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| Q |
236 |
aacctcggtaatacaaaattcaagttcccaacaaac |
271 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
51806040 |
aacctcggtaatacaaaattcaagttcccaacaaac |
51806005 |
T |
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