View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_low_20 (Length: 266)
Name: NF18728_low_20
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 4090152 - 4089944
Alignment:
| Q |
34 |
ttgagatgttgaccccagtaaaattttgagaaaatgacataactcaaagcaatcacttgtgccggtgttgtgtcagacactgacacatgttggacaccgg |
133 |
Q |
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| T |
4090152 |
ttgagatgttgaccccggtaaaattttgagaaaatgacataactcaaagcaatcacttgtgccggtgttgtgtcagacactgacacatgttggacaccgg |
4090053 |
T |
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| Q |
134 |
aacataccttcaatcaaaagtgttggtgccacgcagatattatacgcaacacaaccctaacacttaaataaaccaagaaagcatttatatatttgatcaa |
233 |
Q |
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| T |
4090052 |
aacataccttcaatcaaaagtgttggtgccacgcagatattatacgcaacgcaaccctaacactt-aataaaccaagaaagcatttatatatttgatcaa |
4089954 |
T |
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| Q |
234 |
acatccatcg |
243 |
Q |
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| T |
4089953 |
acatccatcg |
4089944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 7942269 - 7942373
Alignment:
| Q |
58 |
tttgagaaaatgacataactcaaagcaatcacttgtgccggtgttgtgtcagacactgacacatgttggacaccggaacataccttcaatcaaaagtgtt |
157 |
Q |
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| T |
7942269 |
tttgagacaatgacataattcaatgtaatcacatgtgtcagtgctgtgtcggacactgacacgtgtcggacaccacgacacaccttagatcagaagtgtt |
7942368 |
T |
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| Q |
158 |
ggtgc |
162 |
Q |
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| T |
7942369 |
ggtgc |
7942373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 29651764 - 29651731
Alignment:
| Q |
97 |
ggtgttgtgtcagacactgacacatgttggacac |
130 |
Q |
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| T |
29651764 |
ggtgtcgtgtcagacactgacacatgttggacac |
29651731 |
T |
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