View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_low_21 (Length: 260)
Name: NF18728_low_21
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_21 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 15793399 - 15793157
Alignment:
| Q |
18 |
catcttggaaaccattgttgtgattcactatagctagaatcaaaatgccttcttctccctacaatttcaaataaaagaataccaaaactataaacatcac |
117 |
Q |
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| T |
15793399 |
catcttggaaaccattgttgtgattcactatagctagaatcaaaatgccgtcttctccctacaatttcaaataaaagaataccaaaactataaacatcac |
15793300 |
T |
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| Q |
118 |
acttatatgtcactggataaggcttccacatttctggtgcggcatatcctctcgttcctctaaagtgagtattcatttcaatgttactttctctacttct |
217 |
Q |
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| T |
15793299 |
acttatatgtcactggataaggcttccacatttctggtgcggcatatcctctcgttcctctaaagtgagtattcagttcaatgttactttctctacttct |
15793200 |
T |
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| Q |
218 |
aagctttgctaatccaaaatcagctatcttaggttctaacttc |
260 |
Q |
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| T |
15793199 |
aagctttgctaatccaaaatcagctatcttaggttctaacttc |
15793157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 15778725 - 15778947
Alignment:
| Q |
22 |
ttggaaaccattgttgtgattcactatagctagaatcaaaatgccttcttctccctacaatttcaaataaaagaataccaaaactataaacatcacactt |
121 |
Q |
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| T |
15778725 |
ttggaaaccattgttgcgattcactgtaactagaatcgaaatgccttcttctgccaacaatttcaaatagaagaataccaaaactataaacatcacactt |
15778824 |
T |
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| Q |
122 |
atatgtcactggataaggcttccacatttctggtgcggcatatcctctcgttcctctaaagtgagtattcatttcaatgttactttctctacttctaagc |
221 |
Q |
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| T |
15778825 |
gtgtgtaactggataaggcttccacatttcaggtgcagcataacctcgcgttcctctaaagtgagtattcattacaatgttactttctctacttcttaac |
15778924 |
T |
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| Q |
222 |
tttgctaatccaaaatcagctat |
244 |
Q |
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| T |
15778925 |
tttgctaatccaaaatcagctat |
15778947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 15789184 - 15788982
Alignment:
| Q |
35 |
ttgtgattcactatagctagaatcaa---aatgccttcttctccctacaatttcaaataaaagaataccaaaactataaacatcacacttatatgtcact |
131 |
Q |
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| T |
15789184 |
ttgtgattcactatatgtaggatcaataaaatgcgttcttctacctacaatttcaaatagaacaataccaaaactataaacatcgcatttatatgtttct |
15789085 |
T |
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| Q |
132 |
ggataaggcttccacatttctggtgcggcatatcctctcgttcctctaaagtgagtattcatttcaatgttactttctctacttctaagctttgctaatc |
231 |
Q |
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| T |
15789084 |
ggataagccttccacatttcaggtgctgcataagctgcttttcctttaaaacgattattcattgcaatgtgactttctctacttcgaagctttgacaatc |
15788985 |
T |
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| Q |
232 |
caa |
234 |
Q |
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||| |
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| T |
15788984 |
caa |
15788982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 15773136 - 15773079
Alignment:
| Q |
66 |
cttcttctccctacaatttcaaataaaagaataccaaaactataaacatcacacttat |
123 |
Q |
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| T |
15773136 |
cttctcctacctataatttcaaataatagcataccaaaactataaacatcacatttat |
15773079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 15794844 - 15794889
Alignment:
| Q |
78 |
acaatttcaaataaaagaataccaaaactataaacatcacacttat |
123 |
Q |
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| T |
15794844 |
acaatttcaaataacagcataccaaaactataaacatcacatttat |
15794889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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