View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18728_low_24 (Length: 239)

Name: NF18728_low_24
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18728_low_24
NF18728_low_24
[»] chr1 (3 HSPs)
chr1 (1-94)||(13898521-13898614)
chr1 (148-230)||(13898668-13898750)
chr1 (1-68)||(13886616-13886683)
[»] chr7 (1 HSPs)
chr7 (156-218)||(1035796-1035858)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 13898521 - 13898614
Alignment:
Q  1 tgcagccatgtttgaagtgtagcatgaagatgtgaggttgaagttgaaagtgttagttttggtcatgattaaagtaccttgtaattgaactgtg 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13898521 tgcagccatgtttgaagtgtagcatgaagatgtgaggttgaagttgaaagtgttagttttggtcatgattaaagtaccttgtaattgaactgtg 13898614  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 13898668 - 13898750
Alignment:
Q  148 agaatagaattcttggtacaatattggtttcagtgtgaaataggaaatataaacgtgatgacataatttgtggtatgatgatg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13898668 agaatagaattcttggtacaatattggtttcagtgtgaaataggaaatataaacgtgatgacataatttgtggtatgatgatg 13898750  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 13886683 - 13886616
Alignment:
Q  1 tgcagccatgtttgaagtgtagcatgaagatgtgaggttgaagttgaaagtgttagttttggtcatga 68  Q
    |||| ||||||| || |||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  13886683 tgcaaccatgttggaggtgtagcatgaaaatgtgaggttgaaattggaagtgttagttttggtcatga 13886616  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 1035796 - 1035858
Alignment:
Q  156 attcttggtacaatattggtttcagtgtgaaataggaaatataaacgtgatgacataatttgt 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1035796 attcttggtacaatattggtttcagtttgaaataggaaatataaacgtgatgacataatttgt 1035858  T

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