View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_low_26 (Length: 233)
Name: NF18728_low_26
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_26 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 24643838 - 24644062
Alignment:
| Q |
9 |
atcatcataaaatgcaattagctttccaagaccccaatgtccggcaagtgaacacgcttcatttgaaattccttccatttgacaaccatctcccaatata |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24643838 |
atcatcataaaatgcaattagctttccaagaccccaatgtccggcaagtgaacacgcttcatttgaaattccttccatttgacaaccatctcccaatata |
24643937 |
T |
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| Q |
109 |
acatacctagagcagaccaaaaacaaaagcaaaagacaaatgtcacattacgaatcaggaaaacattgcaattcacaagtgcaagcatgtatagatcaac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24643938 |
acatacctagagcagaccaaaaacaaaagcaaaagacaaatgtcacattacgaatcaggaaaacactgcaattcacaagtgcaagcatgtatagatcaac |
24644037 |
T |
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| Q |
209 |
atgtaacaagatgtaattaattatc |
233 |
Q |
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||||||||||||||||||||||||| |
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| T |
24644038 |
atgtaacaagatgtaattaattatc |
24644062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 52486934 - 52486710
Alignment:
| Q |
9 |
atcatcataaaatgcaattagctttccaagaccccaatgtccggcaagtgaacacgcttcatttgaaattccttccatttgacaaccatctcccaatata |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52486934 |
atcatcataaaatgcaattagctttccaagaccccaatgtccggcaagtgaacacgcttcatttgaaattccttccatttgacaaccatctcccaatata |
52486835 |
T |
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| Q |
109 |
acatacctagagcagaccaaaaacaaaagcaaaagacaaatgtcacattacgaatcaggaaaacattgcaattcacaagtgcaagcatgtatagatcaac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52486834 |
acatacctagagcagaccaaaaacaaaagcaaaagacaaatgtcacattacgaatcaggaaaacactgcaattcacaagtgcaagcatgtatagatcaac |
52486735 |
T |
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| Q |
209 |
atgtaacaagatgtaattaattatc |
233 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
52486734 |
atgtaacaagatgtaattaattatc |
52486710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 8336588 - 8336695
Alignment:
| Q |
10 |
tcatcataaaatgcaattagctttccaagaccccaatgtccggcaagtgaacacgcttcatttgaaattccttccatttgacaaccatctcccaatataa |
109 |
Q |
| |
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||||| |||||||| ||||||||||| || ||||| ||||| |||||||| || |||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
8336588 |
tcatcgtaaaatgctattagctttcctagtccccagtgtcctgcaagtgagcaagcttcatttgcaattccctccatttgacaaccatcacccaatatac |
8336687 |
T |
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| Q |
110 |
cataccta |
117 |
Q |
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||||||| |
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| T |
8336688 |
aataccta |
8336695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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