View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_low_27 (Length: 219)
Name: NF18728_low_27
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_27 |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 23915574 - 23915733
Alignment:
| Q |
60 |
agaagagggaacacagagcatgtgggttgtttgtttctgttcttcttcttctcctattgctatcaattaccccaactgatcaattgctatcaattattat |
159 |
Q |
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| T |
23915574 |
agaagagggaacacagagcatgtgggttgtttgtttctgttcttcttcttctccgattgctatcaattaccccaactgatcaattgctatcaattattat |
23915673 |
T |
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| Q |
160 |
cctcaggtaatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
219 |
Q |
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| T |
23915674 |
cctcaggtaatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
23915733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23915495 - 23915539
Alignment:
| Q |
1 |
tggtaattggaagtctttcccctatatatatggagaagatagaagag |
47 |
Q |
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| T |
23915495 |
tggtaattggaagtctttccc--atatatatggagaagatagaagag |
23915539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 18989948 - 18989789
Alignment:
| Q |
60 |
agaagagggaacacagagcatgtgggttgtttgtttctgttcttcttcttctcctattgctatcaattaccccaactgatcaattgctatcaattattat |
159 |
Q |
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| T |
18989948 |
agaagagggaacacagagcatgtgggttgtttgtgtctgttcttcttcttctccgattgctatcaattaccccaactgatcaattgctatcaattattat |
18989849 |
T |
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| Q |
160 |
cctcaggtaatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
219 |
Q |
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| T |
18989848 |
cctcaggtaatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
18989789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 18990027 - 18989952
Alignment:
| Q |
1 |
tggtaattggaagtctttcccctatatatatggagaagat-------agaagagggaatgggagaaagaagagggaac |
71 |
Q |
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| T |
18990027 |
tggtaattggaagtctttccc--atatatatggagaagatagaagagagaagagggaatgggagaaagaagagggaac |
18989952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 30338525 - 30338684
Alignment:
| Q |
60 |
agaagagggaacacagagcatgtgggttgtttgtttctgttcttcttcttctcctattgctatcaattaccccaactgatcaattgctatcaattattat |
159 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30338525 |
agaaaagggaacacagagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattat |
30338624 |
T |
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| Q |
160 |
cctcaggtaatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
219 |
Q |
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| T |
30338625 |
cctcaggtaatttttcttctgaaaacaaacaactgatcaattgagtttgtctctgtttct |
30338684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30338485 - 30338528
Alignment:
| Q |
1 |
tggtaattggaagtctttcccctatatatatggagaagatagaa |
44 |
Q |
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| T |
30338485 |
tggtaattggaagtctttcccttatatatatggagaagatagaa |
30338528 |
T |
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