View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18728_low_3 (Length: 520)
Name: NF18728_low_3
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Original strand, 43996671 - 43997157
Alignment:
| Q |
13 |
aacatattattgtactgtactaggtgttgaaaccatcactgacacaaggttgaagatgaacagtgttgtttgaaaattatcaattgtgttcttatattct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43996671 |
aacatattattgtactgtactaggtgttgaaaccatcactgacacaaggttgaagatgaacagtgttgtttgaaaattatcaattgtgttcttatattct |
43996770 |
T |
|
| Q |
113 |
cttacttattcaaattagtcgttgtttaaagttacttggttgcattataacccatgacttgagtaatgagtatttaaatcatagtattatagtgtcaaat |
212 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43996771 |
cttacttattcaatttagtcgttgttta------cttggttgcattataacccatgacttgagtaatgagtatttaaatcatagtattatagtgtcaaat |
43996864 |
T |
|
| Q |
213 |
taaagcatattcatgagtgaattatttcacttattatcaaatcgatgattgcataatctaaattgtaactatcattgttctcaccactatcaacttcaat |
312 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43996865 |
taaaacatattcatcattgaattatttcacttactatcaaatcgatgattgcataatctaaattgtaactatcattgttctcaccactatcaacttcaat |
43996964 |
T |
|
| Q |
313 |
attattttggttcgaaccaccaatttcacccata-ttgtaatctaaattactatattcactggattaatcaaaatcaagtgcggccttcattaattgtaa |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43996965 |
attattttggttggaaccaccaatttcacccatatttgtaatctaaattactatattcagtggattaatcaaaatcaagtgcggccttcattaattgtaa |
43997064 |
T |
|
| Q |
412 |
tatgaactctactgcttttggcccttcttattgctgtttttctttctggtggcacaattacattatctttcccttttcttgacttgcctattt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43997065 |
tatgaactctactgcttttggcccttcttattgctgtttttatttctggtggcacaattaccttatctttcccttttcttgacttgcctattt |
43997157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University