View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_low_7 (Length: 435)
Name: NF18728_low_7
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 6357643 - 6358054
Alignment:
| Q |
13 |
aatatgtttgtcccaggttccttaatgcactaccattaacatttagtgtcaaagtattgttgtcaacctgtttccaacaaacttggagttaccaaatgct |
112 |
Q |
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| T |
6357643 |
aatatgtttgtcccaggttccttaatgcactaccattaacatttagtgtcaaagtattgttgtcaacatgtttccaacaaacttggagttaccaaatgct |
6357742 |
T |
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| Q |
113 |
cgtcgtgagatatagagctgggaaaagatcgaatcaattgtagaatcagtcaca----tagtttcttcaaaaacaaatttattcattgtacaccacaagt |
208 |
Q |
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| T |
6357743 |
cgttgtgagatatagagctgggaaaagatcgaatcgattgtagaatcagtcacaatcttagtttcttcaaaaacaaatttattcattgtacaccacaagt |
6357842 |
T |
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| Q |
209 |
tccacataatcaaagtagctatgtttccttcttcgacaaccatattttgcaaggcatctaaaatcttcaaactatctgactcaagaattcttcgaggaac |
308 |
Q |
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| T |
6357843 |
tccacataatcaaagtagctatgtttccttcttcgacaaccatattttgcaaggcatctaaaatcttcaaactatctgactcaagaattcttcgaggaac |
6357942 |
T |
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| Q |
309 |
tttcaaggaaccacatgtacgcaaaatagacacagttcacaggaaaagcaataggaaatgaatattagtttcgatgtcaccaacacataacggaaggtag |
408 |
Q |
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| T |
6357943 |
tttcaaggaaccacatgtacgcaaaatagacacagttcgcaggcaaagcaataggaaatgaatattagtttcgatgtcaccaacacataacggaaggtag |
6358042 |
T |
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| Q |
409 |
aagaaattgttg |
420 |
Q |
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| T |
6358043 |
aagaaattgttg |
6358054 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 7588651 - 7588715
Alignment:
| Q |
173 |
cttcaaaaacaaatttattcattgtacaccacaagttccacataatcaaagtagctatgtttcct |
237 |
Q |
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| T |
7588651 |
cttcaaagacaaatttattccttatacaccaaatattccacatgatcaaaggagctatgattcct |
7588715 |
T |
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