View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18728_low_8 (Length: 412)
Name: NF18728_low_8
Description: NF18728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18728_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 4502690 - 4502294
Alignment:
| Q |
1 |
cacagatgcaaagtccctatagtaaaaatattaaagcctttctgtaacagcaaaagtcccgcgtaacacaagtaaaaggtgctaaacataaggctgatat |
100 |
Q |
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| T |
4502690 |
cacagatgcaaagtccctatagaaaaaatattaaagcctttctgtaacagcagaagtccggcgtaacacaagtaaaaggtgctaaacataaggctgatat |
4502591 |
T |
|
| Q |
101 |
ttacagcaacatcgttgtcacaggtgttttagtattcagtatgcatgttggattatgaccagttccttcgtggaatgtatatactttacaaactttcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4502590 |
ttacagcaacatcgttgtcacaggtgttttagtattcagtatgcatgttggattatgaccagttccttcgtggaatgtatatactttacaaactttcaaa |
4502491 |
T |
|
| Q |
201 |
cccgaatttccttaacggattccaaagtcatcaattatgctcaatttttctcctaaatattgtgactacatgtcaaaaccttaatgtcattaagtttcca |
300 |
Q |
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| T |
4502490 |
cccgaatttccttaacggattccaaagtcatcaattatgctcaatttttctcctaaatattgtgactacatgtcaaaaccttaatgtcattaagtttcca |
4502391 |
T |
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| Q |
301 |
cttctctggttatcttcttatcatagctggcccatatagagctaataccaacaagaatctttgtttccaagaaacatccatcttttggtgaattttc |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4502390 |
cttctctggttatcttcttatcatagctggcccatatagagctaataccaacaagaatctttgtttccaagaaacatccatcttttggtgaattttc |
4502294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 4490630 - 4490571
Alignment:
| Q |
338 |
agagctaataccaacaagaatctttgtttccaagaaacatccatcttttggtgaattttc |
397 |
Q |
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||||||| | |||||||||||||||||||||||||| || |||| ||||||||||||||| |
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| T |
4490630 |
agagctagtcccaacaagaatctttgtttccaagaagcaaccattttttggtgaattttc |
4490571 |
T |
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