View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_high_1 (Length: 634)
Name: NF18729_high_1
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 62 - 505
Target Start/End: Complemental strand, 42325322 - 42324876
Alignment:
| Q |
62 |
tatttatatgcagggttcagagttcaat---cttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
158 |
Q |
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| T |
42325322 |
tatttatatgcagggttcagagttcaatattcttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
42325223 |
T |
|
| Q |
159 |
tctctcacaacatcaaacatccctctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
258 |
Q |
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| T |
42325222 |
tctctcacaacatcaaacatccatctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
42325123 |
T |
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| Q |
259 |
tatacatatttggttggtgtaggtgatgacagaccctgatgttcctggccccagtgatccttatctaagagaacacttgcactggtaaatataatatata |
358 |
Q |
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| T |
42325122 |
tatacatatttggttggtgtaggtgatgacagaccctgatgttcctggccctagtgatccttatctaagagaacacttgcactggtaaatataatatata |
42325023 |
T |
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| Q |
359 |
atgagatatagtaccatatatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctgga |
458 |
Q |
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| T |
42325022 |
atgagatatagtaccatatatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctgga |
42324923 |
T |
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| Q |
459 |
acaacagatgctacatttggtaggtattttaatggttgaaaaatgcc |
505 |
Q |
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| T |
42324922 |
acaacagatgctacatttggtaggtattttaatggttgaaaaatgcc |
42324876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 523 - 622
Target Start/End: Complemental strand, 42324848 - 42324749
Alignment:
| Q |
523 |
gatgagagagaatataatgacatattgaaattgtaaaacacacagggaaagaagtagtgagctatgagataccaaagccaaatataggtatacacaggtt |
622 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324848 |
gatgagagagaatataatgacatattgaaattgtatcacacacagggaaagaagtagtgagctatgagataccaaagccaaatataggtatacacaggtt |
42324749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 26206165 - 26206116
Alignment:
| Q |
296 |
gatgttcctggccccagtgatccttatctaagagaacacttgcactggta |
345 |
Q |
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| T |
26206165 |
gatgttcctggcccaagtgatccttatatgaaagaacacttacactggta |
26206116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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