View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18729_high_10 (Length: 324)
Name: NF18729_high_10
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 10982029 - 10981902
Alignment:
| Q |
19 |
catcctatcctgtcttctcttctcctctactcgttctgtcattctcccattaatagcaaggagtaagggttggccaattcaaattctgcattaaatgccc |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10982029 |
catcctatcctgtcttctcttctcatctactcgttctgtcattctcccattaatagcaaggagtaagggttggccaattcaaattctgcattaaatgccc |
10981930 |
T |
|
| Q |
119 |
atttatattatgttcatctcaaaatata |
146 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10981929 |
atttatattatgttcatctcaaaatata |
10981902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 10981439 - 10981368
Alignment:
| Q |
245 |
gttgttaatctttcaattttcagggaaaatagatactgataacatgaaattcgattgtgaagtaagtataat |
316 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10981439 |
gttgttaatctttcaattttcaagggaaatagatactgataacatgaaattcgattgtgaagtaagtataat |
10981368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University