View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18729_high_13 (Length: 229)

Name: NF18729_high_13
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18729_high_13
NF18729_high_13
[»] chr1 (7 HSPs)
chr1 (49-151)||(9047705-9047807)
chr1 (64-150)||(9038466-9038552)
chr1 (148-212)||(9038614-9038678)
chr1 (161-212)||(9040621-9040672)
chr1 (64-150)||(9030310-9030396)
chr1 (148-212)||(9047863-9047926)
chr1 (148-212)||(9030458-9030522)


Alignment Details
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 9047705 - 9047807
Alignment:
Q  49 aagagcagtgacaataaacttggggtttgatgaaaactacatagaaaaagcgttcaacatgaagtcaggttttgatgttgtggctatgaatatttatcca 148  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| |||||| ||||||||    
T  9047705 aagagcagtgtcaaaaaacttagggtttgatgaaaactacatagaaaaagcattcaacatgaagtcaggttttgatgtgatggccatgaatctttatcca 9047804  T
Q  149 ccc 151  Q
    |||    
T  9047805 ccc 9047807  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 9038466 - 9038552
Alignment:
Q  64 aaacttggggtttgatgaaaactacatagaaaaagcgttcaacatgaagtcaggttttgatgttgtggctatgaatatttatccacc 150  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||  |||| |||||| ||||||||||    
T  9038466 aaacttagggtttgatgaagactacatagaaaaagcattcaacatgaagtcagggtttgatgtgatggccatgaatctttatccacc 9038552  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 9038614 - 9038678
Alignment:
Q  148 accctagtgcaagatgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgt 212  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  9038614 accctaatgcaagatgtaaatgggggtctccaaatcctatcacataaaggaaagtggattaatgt 9038678  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 9040621 - 9040672
Alignment:
Q  161 atgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9040621 atgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgt 9040672  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 9030310 - 9030396
Alignment:
Q  64 aaacttggggtttgatgaaaactacatagaaaaagcgttcaacatgaagtcaggttttgatgttgtggctatgaatatttatccacc 150  Q
    |||||| |||||||||||||||||||||||  |||| ||||||||||||||||| ||||||||  |||| |||||| ||||||||||    
T  9030310 aaacttagggtttgatgaaaactacatagaggaagcattcaacatgaagtcagggtttgatgtaatggccatgaatctttatccacc 9030396  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 9047863 - 9047926
Alignment:
Q  148 accctagtgcaagatgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgt 212  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  9047863 accctaatgcaagatgtaaatgggg-tctccaaatcctatcacataaaggaaattggattaatgt 9047926  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 9030458 - 9030522
Alignment:
Q  148 accctagtgcaagatgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgt 212  Q
    |||||||||||||||||||||||||||||  |||||||||| || |||||||  |||||||||||    
T  9030458 accctagtgcaagatgtaaatgggggtcttcaaatcctatcccacaaaggaacgtggattaatgt 9030522  T

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