View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18729_high_4 (Length: 408)

Name: NF18729_high_4
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18729_high_4
NF18729_high_4
[»] chr5 (11 HSPs)
chr5 (230-400)||(9878797-9878967)
chr5 (230-391)||(9867400-9867561)
chr5 (231-400)||(9898836-9899005)
chr5 (14-166)||(9878581-9878733)
chr5 (241-401)||(9863075-9863235)
chr5 (241-401)||(9909130-9909290)
chr5 (14-109)||(9898520-9898615)
chr5 (14-109)||(9867170-9867265)
chr5 (245-368)||(7914127-7914250)
chr5 (16-109)||(9863493-9863586)
chr5 (16-109)||(9908772-9908865)
[»] chr8 (1 HSPs)
chr8 (17-87)||(30946538-30946608)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 230 - 400
Target Start/End: Original strand, 9878797 - 9878967
Alignment:
Q  230 cttgaagcacataccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccataaaagcccccaatgcactaacaagta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9878797 cttgaagcacataccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccataaaagcccccaatgcactaacaagta 9878896  T
Q  330 agacttgaataactggcatagaagccacttccaaaagttgtacaaaacccatctttgcttttgatattctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9878897 agacttgaataactggcatagaagccacttccaaaagttgtacaaaacccatctttgcttttgattttctt 9878967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 230 - 391
Target Start/End: Original strand, 9867400 - 9867561
Alignment:
Q  230 cttgaagcacataccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccataaaagcccccaatgcactaacaagta 329  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  9867400 cttgaatcacataccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccataaaagctcccaatgcactaacaagca 9867499  T
Q  330 agacttgaataactggcatagaagccacttccaaaagttgtacaaaacccatctttgctttt 391  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9867500 agacttgaataactggcatagtagccacttccaaaagttgtacaaaacccatctttgctttt 9867561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 231 - 400
Target Start/End: Original strand, 9898836 - 9899005
Alignment:
Q  231 ttgaagcacataccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccataaaagcccccaatgcactaacaagtaa 330  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  9898836 ttgaatcacttaccttgttcaaggatttcctaaaatctggtgaaagaagattattgaaatactgagtggccatgaaagctcccaatgcactaacaagtaa 9898935  T
Q  331 gacttgaataactggcatagaagccacttccaaaagttgtacaaaacccatctttgcttttgatattctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  9898936 gacttgaataactggcatagaagccacttccaaaagttgtacaaaacccatcttttcttttgattttctt 9899005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 9878581 - 9878733
Alignment:
Q  14 atatgtaccatgatatcatatcttgaagtgaaacacttttagcaaaacttgaaaatataagtgaaggagtgaatataaagaatgcaacctgcaaaaggta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9878581 atatgtaccatgatatcatatcttgaagtgaaacacttttagcaaaacttgaaaatataagtgaaggagtgaatataaagaatgcaacctgcaaaaggta 9878680  T
Q  114 aaccnnnnnnncaaaacagtatttgcttttcacattgaaaatgtgttatgtac 166  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||||    
T  9878681 aaccaaaaaaacaaaacagtatttgcttttcacattgaaaatgtgttatgtac 9878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 241 - 401
Target Start/End: Complemental strand, 9863235 - 9863075
Alignment:
Q  241 taccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccataaaagcccccaatgcactaacaagtaagacttgaata 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||    
T  9863235 taccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccatgaaagctcccaatgcactaataagtaggacttgaata 9863136  T
Q  341 actggcatagaagccacttccaaaagttgtacaaaacccatctttgcttttgatattcttc 401  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  9863135 actggcatggaagccacttccaaaagttgtataaaacccatctttgattttgattttcttc 9863075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 241 - 401
Target Start/End: Original strand, 9909130 - 9909290
Alignment:
Q  241 taccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccataaaagcccccaatgcactaacaagtaagacttgaata 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||    
T  9909130 taccttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccatgaaagctcccaatgcactaataagtaggacttgaata 9909229  T
Q  341 actggcatagaagccacttccaaaagttgtacaaaacccatctttgcttttgatattcttc 401  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  9909230 actggcatggaagccacttccaaaagttgtagaaaacccatctttgattttgattttcttc 9909290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 9898520 - 9898615
Alignment:
Q  14 atatgtaccatgatatcatatcttgaagtgaaacacttttagcaaaacttgaaaatataagtgaaggagtgaatataaagaatgcaacctgcaaaa 109  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  9898520 atatgtaccatgatatcatatcttgaagtgaaacacttttggcaaaacttgaaaatataagagaaggagtgaatataaagaatacaacctgcaaaa 9898615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 9867170 - 9867265
Alignment:
Q  14 atatgtaccatgatatcatatcttgaagtgaaacacttttagcaaaacttgaaaatataagtgaaggagtgaatataaagaatgcaacctgcaaaa 109  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9867170 atatgtaccatgttatcatagcttgaagtgaaacacttttggcaaaacttgaaaatataagtgaaggagtgaatataaagaatacaacctgcaaaa 9867265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 245 - 368
Target Start/End: Complemental strand, 7914250 - 7914127
Alignment:
Q  245 ttgttcaaggatttcctaaaatctggtgaaagaagattgttgaaatactgagtagccataaaagcccccaatgcactaacaagtaagacttgaataactg 344  Q
    |||||||||||||| ||||| |||| | |||||||||| |||||||| ||||||||||||||||| | |||||||||||  |||| |||||  ||| |||    
T  7914250 ttgttcaaggattttctaaagtctgctaaaagaagattattgaaatattgagtagccataaaagctctcaatgcactaattagtaggactttcatagctg 7914151  T
Q  345 gcatagaagccacttccaaaagtt 368  Q
    ||||| ||||||| ||||||||||    
T  7914150 gcataaaagccacatccaaaagtt 7914127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 9863586 - 9863493
Alignment:
Q  16 atgtaccatgatatcatatcttgaagtgaaacacttttagcaaaacttgaaaatataagtgaaggagtgaatataaagaatgcaacctgcaaaa 109  Q
    ||||||||||||||||||||||||||||||||||| || || ||||||| ||| | ||||||||||||||||| || |||  |||||| |||||    
T  9863586 atgtaccatgatatcatatcttgaagtgaaacactctttgctaaacttgcaaacacaagtgaaggagtgaatacaatgaacacaacctacaaaa 9863493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 9908772 - 9908865
Alignment:
Q  16 atgtaccatgatatcatatcttgaagtgaaacacttttagcaaaacttgaaaatataagtgaaggagtgaatataaagaatgcaacctgcaaaa 109  Q
    |||||||||||||||||||||| ||| |||||||| || |||||||||| ||| |  |||||||||||||||| || |||  |||||| |||||    
T  9908772 atgtaccatgatatcatatcttcaagcgaaacactctttgcaaaacttgcaaacacgagtgaaggagtgaatacaatgaacacaacctacaaaa 9908865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 30946608 - 30946538
Alignment:
Q  17 tgtaccatgatatcatatcttgaagtgaaacacttttagcaaaacttgaaaatataagtgaaggagtgaat 87  Q
    ||||||||||||||||||| | ||| |||||||| || |||||||| | ||||||||||| ||||||||||    
T  30946608 tgtaccatgatatcatatcatcaagagaaacactctttgcaaaactggcaaatataagtgcaggagtgaat 30946538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University