View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_high_6 (Length: 397)
Name: NF18729_high_6
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_high_6 |
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| [»] scaffold0288 (2 HSPs) |
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Alignment Details
Target: scaffold0288 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 21896 - 22158
Alignment:
| Q |
20 |
ggtaaaaccaaatataataaccttgaatagaaaaggtaaagtagaaacacaaccaaagaagaacaaaaattaaggaataatcatctttgtttgtcactac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |
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| T |
21896 |
ggtaaaaccaaatataataaccttgaatagaaaaggtaaagtagaaacacaaccaaagaagaaaaaaaattaaggaatactcatctttg----tcactac |
21991 |
T |
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| Q |
120 |
tatttcctatcggattcggagaatactcagttgaacatagatggttgtatttaaatacattcacattgattataattgttatcatttattgcgatatgca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21992 |
tatttcctatcggattcggagaatactcagttgaacatagatggttgtatttaaatacattcacattgattataattgttatcatttattgcgatatgca |
22091 |
T |
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| Q |
220 |
aaatctacgccaaatttgaattactctctcaatagagtaa-ttttttataccctacattaatgctag |
285 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22092 |
aaatctacaccaaatttgaattactctctcaatagagtaatttttttataccctacattaatgctag |
22158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 22216 - 22260
Alignment:
| Q |
343 |
catattaattttcattaaatattcctttaacaatttcatctcatt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22216 |
catattaattttcattaaatattcctttaacaatttcatttcatt |
22260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 4661726 - 4661988
Alignment:
| Q |
20 |
ggtaaaaccaaatataataaccttgaatagaaaaggtaaagtagaaacacaaccaaagaagaacaaaaattaaggaataatcatctttgtttgtcactac |
119 |
Q |
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| T |
4661726 |
ggtaaaaccaaatataataaccttgaatagaaaaggtaaagtagaaacacaaccaaagaagaaaaaaaattaaggaatactcatctttg----tcactac |
4661821 |
T |
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| Q |
120 |
tatttcctatcggattcggagaatactcagttgaacatagatggttgtatttaaatacattcacattgattataattgttatcatttattgcgatatgca |
219 |
Q |
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| T |
4661822 |
tatttcctatcggattcggagaatactcagttgaacatagatggttgtatttaaatacattcacattgattataattgttatcatttattgcgatatgca |
4661921 |
T |
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| Q |
220 |
aaatctacgccaaatttgaattactctctcaatagagtaa-ttttttataccctacattaatgctag |
285 |
Q |
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| T |
4661922 |
aaatctacaccaaatttgaattactctctcaatagagtaatttttttataccctacattaatgctag |
4661988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 4662046 - 4662090
Alignment:
| Q |
343 |
catattaattttcattaaatattcctttaacaatttcatctcatt |
387 |
Q |
| |
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| T |
4662046 |
catattaattttcattaaatattcctttaacaatttcatttcatt |
4662090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 32573127 - 32572860
Alignment:
| Q |
17 |
aagggtaaaaccaaatataataaccttgaatagaaaaggtaaagtagaaacacaaccaaagaagaacaaaaa--ttaaggaataatcatctttgtttgtc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || | |||||||||| ||| || || | |
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| T |
32573127 |
aagggtaaaaccaaatataataaccttgaatagaaaaggtaaagtggaaacacaaccaaagaaaaaaaatatatttaaggaatactcagctgagt----c |
32573032 |
T |
|
| Q |
115 |
actactattt-cctatcggattcggagaatactcagttgaacatagatggttgtatttaaatacattcacattgattataattgttatcatttattgcga |
213 |
Q |
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||||| |||| |||||| |||| ||||| ||| |||||| | | |||| |||||||||||||||||||||||||||||| ||| | |||||||| || |
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| T |
32573031 |
actacaattttcctatcagatttagagaagactgagttgagagtggttggtggtatttaaatacattcacattgattataatagttgttatttattgtga |
32572932 |
T |
|
| Q |
214 |
tatgcaaaatctacgccaaatttgaattactctctcaatagagtaattttttataccctacattaatgctag |
285 |
Q |
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||||||||| || ||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||| |
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| T |
32572931 |
aatgcaaaatttatgccaaatttgaattactctctgaatagagtaattttttgtaccatacattgatgctag |
32572860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 29310994 - 29311111
Alignment:
| Q |
168 |
atttaaatacattcacattgattataattgttatcatttattgcgatatgcaaaatctacgccaaatttgaattactctctcaatagagtaattttttat |
267 |
Q |
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|||||||||||||| | || ||||||||| || | ||||||| ||||||||||| |||||||||||||||||||||||| |||||| || ||||| | |
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| T |
29310994 |
atttaaatacattccctttaattataattattgtagtttattgtaatatgcaaaatttacgccaaatttgaattactctcttaatagaacaaatttttgt |
29311093 |
T |
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| Q |
268 |
accctacattaatgctag |
285 |
Q |
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||| | |||||||||||| |
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| T |
29311094 |
accatgcattaatgctag |
29311111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 45 - 263
Target Start/End: Complemental strand, 49319100 - 49318877
Alignment:
| Q |
45 |
aatagaaaaggtaaagtagaaacacaaccaaagaagaacaaaaa--ttaaggaataatcatctttgtttgtcactactattt-cctatcggattcggaga |
141 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||| ||||| ||||||||||| ||| | | ||| |||| |
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| T |
49319100 |
aatagaaaaggtaaagtagatacacaaccaaagaagaaaaaaagatttaaggaatactcagttttgt----cactactattttcctgttgaatttagaga |
49319005 |
T |
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| Q |
142 |
atactcagttgaacatagatggttgtatttaaatacattcacattgattataattgttatcatttattgcgatatgcaaaatctacgccaaatttg---- |
237 |
Q |
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|||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| || |||||||||| |
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| T |
49319004 |
atacacagttgaacgtaggtggttgtatttaaatacattcacattgattataactgttgccatttattgtgatatgcaaaatttatgccaaatttgaatt |
49318905 |
T |
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| Q |
238 |
--aattactctctcaatagagtaatttt |
263 |
Q |
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||||||||||| |||||||||||||| |
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| T |
49318904 |
tgaattactctctgaatagagtaatttt |
49318877 |
T |
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