View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_high_7 (Length: 394)
Name: NF18729_high_7
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 6e-84; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 5575095 - 5574930
Alignment:
| Q |
39 |
actactgtaaactagaattaaataaaataagtgtaatatgttctgctacctcaagtttgatccgatttgtgtttgataagctagttgataactttagcaa |
138 |
Q |
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| T |
5575095 |
actactgtaaactagaattaaataaaataagtgtaatatgttctgctacctcaagtttgatccgatttgtgtttgataagctagttgataactttagcaa |
5574996 |
T |
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| Q |
139 |
aagaggtgggtcaaatttaagtggatgataatgatgatagttgagttggtttttacaattgttaat |
204 |
Q |
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| T |
5574995 |
aggaggtggatcaaatttaagtggatgataatgatgatagttgagttggtttttacaattgttaat |
5574930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 5572195 - 5572015
Alignment:
| Q |
41 |
tactgtaaactagaattaaataaaataagtgtaatatgttctgctacctcaagtttgatccgatttgtgtttgataagctagttgataactttagcaaaa |
140 |
Q |
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| T |
5572195 |
tactgtaaactagaattaaatcaaataagtgcaattggttctaccaccttatgtttgattctatttgtgtttgatagtttatttgataactttagcaaaa |
5572096 |
T |
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| Q |
141 |
gaggtgggtcaaatttaagtggatgataatgatgatagttgagttggtttttacaattgttaatggctaagtagaataaac |
221 |
Q |
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| T |
5572095 |
gaggtgactcacagttaggtggatgataatgatgataattaagttggtttttacaattgttaatggatatgtggaataaac |
5572015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 5579831 - 5579653
Alignment:
| Q |
44 |
tgtaaactagaattaaataaaataagtgtaatatgttctgctacctcaagtttga-tccgatttgtgtttgataagctagttgataactttagcaaaaga |
142 |
Q |
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| T |
5579831 |
tgtaaactagaattaagtcaaataagtgtaattggttctgccgccttacatttgagtgaaatttgtgtttgatagcttagttgataaatttagcaaaaga |
5579732 |
T |
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| Q |
143 |
ggtgggtcaaatttaagtggatgataatgatgatagttgagttggtttttacaattgttaatggctaagtagaataaac |
221 |
Q |
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| T |
5579731 |
ggtgattcacagttaagcggatgataatgatgataattaagttggtttttacaattgttaatgggtaggttgaataaac |
5579653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 5570285 - 5570227
Alignment:
| Q |
265 |
ccttctcttattcagccaaagagatgaatgagctgaaaaatagtgatgagaatttgttg |
323 |
Q |
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| T |
5570285 |
ccttctcttattcagtcaaagagatgaatgagctgaaaaatagtgatgagaatttgttg |
5570227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 5579598 - 5579521
Alignment:
| Q |
263 |
tgccttctcttattcagccaaagagatgaatgagctgaaaaatagtgatgagaatttgttgagcaagttttatggcata |
341 |
Q |
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| T |
5579598 |
tgccttctcttagtcagccaaagagatgaatgagctgaaaaa-agtgatgagaaattgttgcacatgttttctggcata |
5579521 |
T |
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