View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18729_low_10 (Length: 383)

Name: NF18729_low_10
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18729_low_10
NF18729_low_10
[»] chr1 (2 HSPs)
chr1 (46-340)||(44680679-44680973)
chr1 (46-340)||(23271921-23272215)
[»] chr6 (1 HSPs)
chr6 (46-340)||(2481464-2481758)
[»] chr4 (2 HSPs)
chr4 (46-340)||(12632359-12632653)
chr4 (46-340)||(27108066-27108360)
[»] chr3 (2 HSPs)
chr3 (201-338)||(4709008-4709145)
chr3 (242-343)||(4708773-4708873)
[»] chr5 (1 HSPs)
chr5 (243-305)||(39789350-39789412)
[»] chr2 (1 HSPs)
chr2 (263-328)||(13510120-13510187)
[»] chr8 (1 HSPs)
chr8 (284-339)||(18616199-18616254)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 46 - 340
Target Start/End: Original strand, 44680679 - 44680973
Alignment:
Q  46 ccactcaattggaaatatatcatgacacttttgtaatttaattagtaaatgagctttgcaatcacactttgacgattctctatttctctgctcttttgat 145  Q
    ||||||| ||||||||||||||||| | ||||||||||| ||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  44680679 ccactcagttggaaatatatcatgagatttttgtaatttgattcgtaaatgagctttgcattcacactttgaggattgtctatttctctgctcttttgat 44680778  T
Q  146 ggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnnntcacgcctgctcataaccccattcttgtttgtgaatctaccnnnnnnnattg 245  Q
    |||||||| | ||||||||| ||| |||||||||||||||        ||||| ||||  |||||||||||||| |||  |||||||||       ||||    
T  44680779 ggttccattattttcaaggatgctttaccttcacgatgacaaaaaatatcacgtctgcaaataaccccattcttttttacgaatctaccttttttaattg 44680878  T
Q  246 agaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 340  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44680879 agaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 44680973  T

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Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 46 - 340
Target Start/End: Original strand, 23271921 - 23272215
Alignment:
Q  46 ccactcaattggaaatatatcatgacacttttgtaatttaattagtaaatgagctttgcaatcacactttgacgattctctatttctctgctcttttgat 145  Q
    ||||||| ||||||| ||||||||| | ||||||||||| ||| |||||||||||||||| | |||||||||| ||| ||||||||||||||||||||||    
T  23271921 ccactcagttggaaacatatcatgagatttttgtaatttgattcgtaaatgagctttgcatttacactttgacaattgtctatttctctgctcttttgat 23272020  T
Q  146 ggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnnntcacgcctgctcataaccccattcttgtttgtgaatctaccnnnnnnnattg 245  Q
    |||||||| | | ||||||| ||| |||||||||||||||        ||||| ||||  |||||||||||||| |||  |||||||||       ||||    
T  23272021 ggttccattattgtcaaggatgctttaccttcacgatgacaaaaaatatcacgtctgcaaataaccccattcttttttacgaatctaccttttttaattg 23272120  T
Q  246 agaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 340  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  23272121 agaacccttgttgataagcatatctcttataaaagacataagcttcttcttcactaagaaaaatttgacaaacaaatggaacacaatttgtctca 23272215  T

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Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 46 - 340
Target Start/End: Complemental strand, 2481758 - 2481464
Alignment:
Q  46 ccactcaattggaaatatatcatgacacttttgtaatttaattagtaaatgagctttgcaatcacactttgacgattctctatttctctgctcttttgat 145  Q
    ||||||| ||||||| ||||||||| | ||||||||||| ||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  2481758 ccactcagttggaaacatatcatgagatttttgtaatttgattcgtaaatgagctttgcattcacactttgaggattgtctatttctctgctcttttgat 2481659  T
Q  146 ggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnnntcacgcctgctcataaccccattcttgtttgtgaatctaccnnnnnnnattg 245  Q
    |||||||| | ||||||||| ||| |||||||||||||||        ||||| ||||  |||||||||||||| |||  |||||||||       ||||    
T  2481658 ggttccattattttcaaggatgctttaccttcacgatgacaaaaaatatcacgtctgcaaataaccccattcttttttacgaatctaccttttttaattg 2481559  T
Q  246 agaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 340  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2481558 agaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 2481464  T

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Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 46 - 340
Target Start/End: Original strand, 12632359 - 12632653
Alignment:
Q  46 ccactcaattggaaatatatcatgacacttttgtaatttaattagtaaatgagctttgcaatcacactttgacgattctctatttctctgctcttttgat 145  Q
    ||||||| ||||||| ||||||||| | ||||||||||| ||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  12632359 ccactcagttggaaacatatcatgagatttttgtaatttgattcgtaaatgagctttgcattcacactttgaggattgtctatttctctgctcttttgat 12632458  T
Q  146 ggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnnntcacgcctgctcataaccccattcttgtttgtgaatctaccnnnnnnnattg 245  Q
    |||||||| | ||||||||| ||| |||||||||||||||        ||||| ||||  |||||||||||||| |||  |||||||||       ||||    
T  12632459 ggttccattattttcaaggatgctttaccttcacgatgacaaaaaatatcacgtctgcaaataaccccattcttttttacgaatctaccttttttaattg 12632558  T
Q  246 agaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 340  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12632559 agaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 12632653  T

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Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 46 - 340
Target Start/End: Original strand, 27108066 - 27108360
Alignment:
Q  46 ccactcaattggaaatatatcatgacacttttgtaatttaattagtaaatgagctttgcaatcacactttgacgattctctatttctctgctcttttgat 145  Q
    ||||||| ||||||| ||||||||| | ||||||||||| ||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  27108066 ccactcagttggaaacatatcatgagatttttgtaatttgattcgtaaatgagctttgcattcacactttgaggattgtctatttctctgctcttttgat 27108165  T
Q  146 ggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnnntcacgcctgctcataaccccattcttgtttgtgaatctaccnnnnnnnattg 245  Q
    |||||||| | ||||||||| ||| |||||||||||||||        ||||| ||||  |||||||||||||| |||  |||||||||       ||||    
T  27108166 ggttccattattttcaaggatgctttaccttcacgatgacaaaaaatatcacgtctgcaaataaccccattcttttttacgaatctaccttttttaattg 27108265  T
Q  246 agaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 340  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27108266 agaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 27108360  T

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Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 201 - 338
Target Start/End: Original strand, 4709008 - 4709145
Alignment:
Q  201 tgctcataaccccattcttgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcact 300  Q
    |||| |||||||||||||| |||  |||||||||       ||||| ||  |||| ||||||||||||||||||||||||||| || |||||||||||||    
T  4709008 tgctaataaccccattcttttttacgaatctacctttttttattgacaattcttgctgataagcatatctcttataaaagacatatccttcttcttcact 4709107  T
Q  301 aagaaaaatttgaccaacaaagggaacacaatttgtct 338  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  4709108 aagaaaaatttgaccaacaaaggaaacaaaatttgtct 4709145  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 242 - 343
Target Start/End: Complemental strand, 4708873 - 4708773
Alignment:
Q  242 attgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctcat 341  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||||||||    
T  4708873 attgagaacccttgttgataagcatatctcttataaaa-agacatgcttctttttcactaaaaaaaattcgaccaacaaagagaacataatttgtctcat 4708775  T
Q  342 ta 343  Q
    ||    
T  4708774 ta 4708773  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 39789350 - 39789412
Alignment:
Q  243 ttgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaa 305  Q
    |||||||||| |||||||| |||||| |||||||||||| |||| ||||||||||||||||||    
T  39789350 ttgagaacccgtgttgatatgcatatatcttataaaagataaattcttcttcttcactaagaa 39789412  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 13510187 - 13510120
Alignment:
Q  263 gcatatctcttataaaagacaaatgcttcttcttcactaagaaaa--atttgaccaacaaagggaaca 328  Q
    |||||||||||||| |||||||||| |||||| |  |||||||||  |||||||||||||| ||||||    
T  13510187 gcatatctcttatagaagacaaatgtttcttccttgctaagaaaaatatttgaccaacaaaaggaaca 13510120  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 18616199 - 18616254
Alignment:
Q  284 aatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctc 339  Q
    |||||||||| |||| ||||||||||||||||| ||||   |||||||||||||||    
T  18616199 aatgcttctttttcattaagaaaaatttgaccagcaaaaaaaacacaatttgtctc 18616254  T

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