View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_low_11 (Length: 366)
Name: NF18729_low_11
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_low_11 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 10068 - 9717
Alignment:
| Q |
10 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
10068 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagac-gtgggtgggtataggaaattt |
9970 |
T |
|
| Q |
110 |
gttattccttgcccactttattccactannnnnnn-attacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
208 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9969 |
gttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
9870 |
T |
|
| Q |
209 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9869 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
9770 |
T |
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| Q |
309 |
cagtgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9769 |
cagtgctacgccttcaaccactcggccatctctcctacataatgattatgtcc |
9717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 18181063 - 18180712
Alignment:
| Q |
10 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
18181063 |
attattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagac-gtgggtgggtataggaaattt |
18180965 |
T |
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| Q |
110 |
gttattccttgcccactttattccactannnnnnn-attacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
208 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180964 |
gttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatct |
18180865 |
T |
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| Q |
209 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180864 |
atttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttc |
18180765 |
T |
|
| Q |
309 |
cagtgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18180764 |
cagtgctacgccttcaaccactcggccatctctcctacataatgattatgtcc |
18180712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 113 - 361
Target Start/End: Complemental strand, 37189616 - 37189370
Alignment:
| Q |
113 |
attccttgcccactttattccactannnnnnn-attacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatctatt |
211 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37189616 |
attccttgcccactttattccactattttttttattacagaaaacagaaataaattaggaatagagaattcacatcaaagttggaataatgatatctatt |
37189517 |
T |
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| Q |
212 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccag |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189516 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagag---ttcgaaccctcggtaaacaaaaagcctacatagcagttccag |
37189420 |
T |
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| Q |
312 |
tgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc |
361 |
Q |
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| || | |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37189419 |
tactgcaccttcaaccactcggccatctctcctacataatgattatgtcc |
37189370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 244912 - 244818
Alignment:
| Q |
256 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||| |
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| T |
244912 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccaatgctacgccttgaaccgctcggccatctttcctacataa |
244818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 284
Target Start/End: Original strand, 207782 - 207817
Alignment:
| Q |
249 |
aagggtgcggaaagagagggattcgaaccctcggta |
284 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
207782 |
aagggagcggaaagagagggattcgaaccctcggta |
207817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 27029783 - 27029873
Alignment:
| Q |
268 |
gattcgaaccctcggtaaacaaaaa----gcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgat |
354 |
Q |
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||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27029783 |
gattcgaaccctcggtaaaaaaaaaaaaagcttacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgat |
27029873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 284
Target Start/End: Original strand, 42790 - 42818
Alignment:
| Q |
256 |
cggaaagagagggattcgaaccctcggta |
284 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42790 |
cggaaagagagggattcgaaccctcggta |
42818 |
T |
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