View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_low_12 (Length: 359)
Name: NF18729_low_12
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 45 - 340
Target Start/End: Original strand, 30701469 - 30701764
Alignment:
| Q |
45 |
tctttactaccttaaaactatcttagagtaacacactataactacaaggttcatgagattagagtaattaaattaaattatattatagagtgccaacata |
144 |
Q |
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| T |
30701469 |
tctttactaccttaaaactatcttagagtaacacaccataactacaaggttcatgagattagagaaattaaattaaattatatcatagagtgccaacata |
30701568 |
T |
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| Q |
145 |
ataaccaaacgacaactcatgaaatattctatcatattttaagttgttttctttgacattataacccattctcctttgtagtatgtttttgcactctcca |
244 |
Q |
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| T |
30701569 |
ataaccaaacgacaactcatgaaatattctatcatattttaagttgttttctttgacattataacccattctcctttgtagtatgtttttgcactctcca |
30701668 |
T |
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| Q |
245 |
tggtttgaaactcatagaatcatgcatgtgcttctaccaattcacatcttttatcaatgcacttaaaaacatataacaagtccctatactttggac |
340 |
Q |
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| T |
30701669 |
tggtttgaaactcatagaatcatgcatgtgcttctaccaattcacatcttttatcaatgcacttaaaaacatataacaagtccctatactttggac |
30701764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 46 - 340
Target Start/End: Original strand, 30736585 - 30736879
Alignment:
| Q |
46 |
ctttactaccttaaaactatcttagagtaacacactataactacaaggttcatgagattagagtaattaaattaaattatattatagagtgccaacataa |
145 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30736585 |
ctttactaccttaaaactatcttagagtaacacaccataactacaaggttcatgagattagagaaattaaattaaattatattatagagtgccaacataa |
30736684 |
T |
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| Q |
146 |
taaccaaacgacaactcatgaaatattctatcatattttaagttgttttctttgacattataacccattctcctttgtagtatgtttttgcactctccat |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30736685 |
taaccaaacgacaactcatgaaatattctatcatattttaagttgttttctttgacattataacccattctcctttgtattatgtttttgcactctccat |
30736784 |
T |
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| Q |
246 |
ggtttgaaactcatagaatcatgcatgtgcttctaccaattcacatcttttatcaatgcacttaaaaacatataacaagtccctatactttggac |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30736785 |
ggtttgaaactcatagaatcatgcatgtgcttctaccaattcacatcttttatcaatgcacttaaaaacatataacaagtccctatactttggac |
30736879 |
T |
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