View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_low_14 (Length: 289)
Name: NF18729_low_14
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 49774275 - 49774534
Alignment:
| Q |
18 |
aggacaaacaaggccttgatcagggaactaagtactcctccagagggttctaaagacttgtacttcacaacacagcactctcagtctttcttaacccaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49774275 |
aggacaaacaaggccttgatcagggaactaagtactcctccagagggttctaaagacttgtacttcacaacacagcactctcagtctttcttaacccaat |
49774374 |
T |
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| Q |
118 |
gtatggcttgcctttggaagcagaacctatcgtattggcgaaatcccccatacagtgcagtgagacttttattcacaacggtcatagccttcttgttcgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49774375 |
gtatggcttgcctttggaagcagaacctatcgtattggcgaaatcccccatacagtgcagtgagacttttattcacaacggtcatagccttcttgttcgg |
49774474 |
T |
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| Q |
218 |
gacaatattttggaatattggctcaaaaaggtaccaagccatgttcctaactcgtttctg |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49774475 |
gacaatattttggaatattggctcaaaaaggtaccaagccatgttcctgactcgtttctg |
49774534 |
T |
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