View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_low_16 (Length: 260)
Name: NF18729_low_16
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_low_16 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 62728 - 62497
Alignment:
| Q |
19 |
aatgaatgtagaaaatttcattaacaatattctctagccttgcaacaattaatttttatgcagtgtgtgattaactcatcaattgcaacaggttttgcag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
62728 |
aatgaatgtagaaaatttcattaacaatattctctagccttgcaacaattaatttttatgcggtgtgtgattaactcatcaattgcaacaggttttgcag |
62629 |
T |
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| Q |
119 |
caccatacacacacctaactactgtttcagcatccatgatctatgattaggttcttgagttgttgttgctcaactcgcagcaagcactatcgtagtccca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
62628 |
caccatacacacacctaactactgtttcagcatccatgatctatgattaggttcttgagttgttgttgttcaactcgcagcaagcactatcgtagtccca |
62529 |
T |
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| Q |
219 |
taacatttcatttcaatattctcacatttcat |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
62528 |
taacatttcatttcaatattctcacatttcat |
62497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 3414107 - 3414332
Alignment:
| Q |
19 |
aatgaatgtagaaaatttcattaacaatattctctagccttgcaacaattaatttttatgcagtgtgtgattaactcatcaattgcaacaggttttgcag |
118 |
Q |
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||||| |||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3414107 |
aatgagtgtagaaaatttcattaacagtattatctaaccttgcaataattaatttttatgcagtgtgtgattaactcatcaattgcaacaggttttgcag |
3414206 |
T |
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| Q |
119 |
caccatacacacacctaactactgtttcagcatccatgatctatgattaggttcttgagttgttgttgctcaactcgcagcaagcactatcgtagtccca |
218 |
Q |
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| T |
3414207 |
caccatacacacacctaactactgtttcagcatccatgatctatgattaggttcttgagttgttgttgttcaactcgcagcaagcactatcgtagtccca |
3414306 |
T |
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| Q |
219 |
taacatttcatttcaatattctcaca |
244 |
Q |
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||||||||||||||||||| |||||| |
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| T |
3414307 |
taacatttcatttcaatatcctcaca |
3414332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 5877472 - 5877403
Alignment:
| Q |
86 |
tgattaactcatcaattgcaacaggttttgcagcaccatacacacacctaactactgtttcagcatccat |
155 |
Q |
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||||||| |||||||| ||| || |||| |||||||||| | |||||| ||||| |||||||||||||| |
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| T |
5877472 |
tgattaaatcatcaatagcagcaaattttccagcaccataaatacaccttactaccgtttcagcatccat |
5877403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 11991369 - 11991264
Alignment:
| Q |
75 |
tatgcagtgtgtgattaactcatcaattgcaacaggttttgcagcaccatacacacacctaactactg-tttcagcatccatgatctatgattaggttct |
173 |
Q |
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|||||||| | ||||||| |||||| ||||| |||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||| |||| |
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| T |
11991369 |
tatgcagtctatgattaattcatcagttgcatcaggttttgcagcaccatgtacacaccttactactgatttcagcatccat-ctctatgattagattct |
11991271 |
T |
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| Q |
174 |
tgagttg |
180 |
Q |
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||||||| |
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| T |
11991270 |
tgagttg |
11991264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 12021551 - 12021453
Alignment:
| Q |
86 |
tgattaactcatcaattgcaacaggttttgcagcaccatacacacacctaactactgtttcagcatccatgatctatgattaggttcttgagttgttgtt |
185 |
Q |
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||||||| |||||||||||| || |||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||| || |||||||| |||| |
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| T |
12021551 |
tgattaattcatcaattgcagcaagttttgcagcaccacgtacacaccttactattgtttcagcatccat-ctctatgattagatttttgagttgatgtt |
12021453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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