View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18729_low_18 (Length: 229)

Name: NF18729_low_18
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18729_low_18
NF18729_low_18
[»] chr1 (7 HSPs)
chr1 (49-151)||(9047705-9047807)
chr1 (64-150)||(9038466-9038552)
chr1 (148-212)||(9038614-9038678)
chr1 (161-212)||(9040621-9040672)
chr1 (64-150)||(9030310-9030396)
chr1 (148-212)||(9047863-9047926)
chr1 (148-212)||(9030458-9030522)


Alignment Details
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 9047705 - 9047807
Alignment:
Q  49 aagagcagtgacaataaacttggggtttgatgaaaactacatagaaaaagcgttcaacatgaagtcaggttttgatgttgtggctatgaatatttatcca 148  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| |||||| ||||||||    
T  9047705 aagagcagtgtcaaaaaacttagggtttgatgaaaactacatagaaaaagcattcaacatgaagtcaggttttgatgtgatggccatgaatctttatcca 9047804  T
Q  149 ccc 151  Q
    |||    
T  9047805 ccc 9047807  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 9038466 - 9038552
Alignment:
Q  64 aaacttggggtttgatgaaaactacatagaaaaagcgttcaacatgaagtcaggttttgatgttgtggctatgaatatttatccacc 150  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||  |||| |||||| ||||||||||    
T  9038466 aaacttagggtttgatgaagactacatagaaaaagcattcaacatgaagtcagggtttgatgtgatggccatgaatctttatccacc 9038552  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 9038614 - 9038678
Alignment:
Q  148 accctagtgcaagatgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgt 212  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  9038614 accctaatgcaagatgtaaatgggggtctccaaatcctatcacataaaggaaagtggattaatgt 9038678  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 9040621 - 9040672
Alignment:
Q  161 atgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9040621 atgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgt 9040672  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 9030310 - 9030396
Alignment:
Q  64 aaacttggggtttgatgaaaactacatagaaaaagcgttcaacatgaagtcaggttttgatgttgtggctatgaatatttatccacc 150  Q
    |||||| |||||||||||||||||||||||  |||| ||||||||||||||||| ||||||||  |||| |||||| ||||||||||    
T  9030310 aaacttagggtttgatgaaaactacatagaggaagcattcaacatgaagtcagggtttgatgtaatggccatgaatctttatccacc 9030396  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 9047863 - 9047926
Alignment:
Q  148 accctagtgcaagatgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgt 212  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  9047863 accctaatgcaagatgtaaatgggg-tctccaaatcctatcacataaaggaaattggattaatgt 9047926  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 9030458 - 9030522
Alignment:
Q  148 accctagtgcaagatgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgt 212  Q
    |||||||||||||||||||||||||||||  |||||||||| || |||||||  |||||||||||    
T  9030458 accctagtgcaagatgtaaatgggggtcttcaaatcctatcccacaaaggaacgtggattaatgt 9030522  T

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