View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_low_2 (Length: 562)
Name: NF18729_low_2
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 546
Target Start/End: Original strand, 43061433 - 43061966
Alignment:
| Q |
13 |
aatatgagaattggagacgacaatgaaagttgtaacaatgagtacatatgattatatgaatatagtagtggttaagataaatatgttgatttactgcttt |
112 |
Q |
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| T |
43061433 |
aatatgagaattggagacgacaatgaaagttgtaacaatgagtacatatgattatatgaatatagtagtggttaagataaatatgttgatttactgcttt |
43061532 |
T |
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| Q |
113 |
tcttcacactagagcaaattttgttgaaacctttcttgcaaactagaattttttcattctgagcagtaaaattttgttgaaaccttactatatgtaacct |
212 |
Q |
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| T |
43061533 |
tcttcacactagagcaaattttgttgaaacctttcttgcaaactagaattttttcattctgagcagtaaaattttgttgaaaccttactatatgtaacct |
43061632 |
T |
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| Q |
213 |
aggcaacgccgggtaaatacgctagttatatgaatttttcataagttaatgtttcccgttaagagctaaattagaaaattaatcgcgagcaaaagaaaac |
312 |
Q |
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| T |
43061633 |
gggcaacgccgggtaaatacgctagttatatgaatttttcataagttaatgtttcccattaagagctaaattagaaaattaatcgcaagcaaaagaaatc |
43061732 |
T |
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| Q |
313 |
caagaagcatcaatgatgagttcaaattcaaat---cnnnnnnnnttctcgagaaccaaagtacacacttcatgatggtataacatgtttaacaatgaat |
409 |
Q |
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| T |
43061733 |
caagaagcatca---atgagttcaaattcaaataaaaaaaaaaaattctcgagaaccaaagtacacactacatgatggtataacatgtttaacaatgaat |
43061829 |
T |
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| Q |
410 |
gaataaacaaataacaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaactaaaataaaattctacgtatgcaaataccgtaggta |
509 |
Q |
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| T |
43061830 |
gaataaacaaataaaaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaactaaaataaaattctacgtatgcaaataccgtaggta |
43061929 |
T |
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| Q |
510 |
gaacctagaacacaacattgcatttgtcgggcaaaac |
546 |
Q |
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| T |
43061930 |
gaacctagaacacaacattgcatttttcgggcaaaac |
43061966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 11874047 - 11874008
Alignment:
| Q |
201 |
tatatgtaacctaggcaacgccgggtaaatacgctagtta |
240 |
Q |
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| T |
11874047 |
tatatgtaacccaggcaacgtcgggtaaatacgctagtta |
11874008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 9855626 - 9855586
Alignment:
| Q |
201 |
tatatgtaacctaggcaacgccgggtaaatacgctagttat |
241 |
Q |
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| T |
9855626 |
tatatgtaatctgggcaacgccggataaatacgctagttat |
9855586 |
T |
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