View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_low_20 (Length: 214)
Name: NF18729_low_20
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 41319599 - 41319780
Alignment:
| Q |
15 |
aaaataaacagacagtgtaataataagtgaaccacgtttcatgataagacactgacagcacaaatcnnnnnnncaccgagttaaatcactcacctggtga |
114 |
Q |
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| T |
41319599 |
aaaataaacagacagtgtaataataagtgaaccacgtttcatgataagacactgacagcacaaatcaaaaaaacaccgagttaaatcactcacctggtga |
41319698 |
T |
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| Q |
115 |
aaccccgtttctttagtgagtggaacaccgagttcagccatacaagcatgcattctatcatctgagccatacaatcctggat |
196 |
Q |
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| T |
41319699 |
aaccccgtttctttagtgagtggaacaccgagttcagccatacaagcatgcattctatcatctgagccatacaatcctggat |
41319780 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 2619540 - 2619450
Alignment:
| Q |
106 |
acctggtgaaaccccgtttctttagtgagtggaacaccgagttcagccatacaagcatgcattctatcatctgagccatacaatcctggat |
196 |
Q |
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| T |
2619540 |
acctggtgaaaaccgatttcctttgtaagtggaacaccaagttcagccatacaagcttgcattcgatcatcagaaccataaagtcctggat |
2619450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 29612989 - 29613048
Alignment:
| Q |
130 |
gtgagtggaacaccgagttcagccatacaagcatgcattctatcatctgagccatacaat |
189 |
Q |
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| T |
29612989 |
gtgagaggaacaccaagctcagccatacaagcttgaatcctatcatctgacccatacaat |
29613048 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 22776348 - 22776418
Alignment:
| Q |
106 |
acctggtgaaaccccgtttctttagtgagtggaacaccgagttcagccatacaagcatgcattctatcatc |
176 |
Q |
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| T |
22776348 |
acctggtgaaaccctgcttccttggttaatggaacacctagctcagccatgcaagcttgcattctatcatc |
22776418 |
T |
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