View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18729_low_3 (Length: 453)

Name: NF18729_low_3
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18729_low_3
NF18729_low_3
[»] chr4 (3 HSPs)
chr4 (19-446)||(43396881-43397306)
chr4 (168-221)||(27131678-27131731)
chr4 (168-231)||(7422153-7422216)
[»] chr5 (5 HSPs)
chr5 (375-440)||(32358539-32358605)
chr5 (170-216)||(18542218-18542264)
chr5 (168-216)||(12976658-12976706)
chr5 (170-238)||(28735820-28735887)
chr5 (269-309)||(38713335-38713375)
[»] chr6 (2 HSPs)
chr6 (168-221)||(2468478-2468531)
chr6 (176-224)||(10338607-10338655)
[»] chr1 (2 HSPs)
chr1 (167-240)||(36552252-36552325)
chr1 (174-215)||(2445459-2445500)
[»] chr8 (1 HSPs)
chr8 (180-221)||(18992471-18992512)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 43397306 - 43396881
Alignment:
Q  19 aggcaaagctcaaggagatgaactaagaagtttgaaatagttcgataaa--------tgattcaaattccgactgttaacataacatactaaaatcctat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||    
T  43397306 aggcaaagctcaaggagatgaactaagaagtttgaaatagttcgataaagagatatatgattcaaattccgactattaacataacatactaaaatcctat 43397207  T
Q  111 atggcccctacacttcagattgaaaatatgttcgtgtctgacggaattggtgtacaacaacacatgtgattacattcaattactactattttcttaaat- 209  Q
    |||| ||    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  43397206 atggtcc----acttcagattgaaaatatgttcgtgtccgacggaattggtgtacaacaacacatgtgattacattcaattactgctattttcttaaatt 43397111  T
Q  210 gattactaatgtttatgtgtcattgtcgtatctgtgtcnnnnnnnctagagtaaagacacaatttagtctctcacaattttatcacggtctaatttaatc 309  Q
    ||||||||||||||||||||||||||       |||||       ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  43397110 gattactaatgtttatgtgtcattgt-------gtgtcaaaaaaactagagtaaagacacaatttagtctctcacaattttatcacggcctagtttaatc 43397018  T
Q  310 cattacttnnnnnnncattaaagtagtccttgatattttcaaactggagacaaattagtcctgaactcattataacagaggatttatttatcttcaattt 409  Q
    ||||||||       |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  |||||| |||||||||||||||||    
T  43397017 cattacttaaaaaaacattaaagtagtccttgatattttcaaactggggataaattagtcctgaactcattatacaagaggacttatttatcttcaattt 43396918  T
Q  410 gaaaatgtcaatgactagtttggtattatttcatctc 446  Q
    |||||||||||||||||||||||||||||||| ||||    
T  43396917 gaaaatgtcaatgactagtttggtattatttcttctc 43396881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 27131678 - 27131731
Alignment:
Q  168 caacacatgtgattacattcaattactactattttcttaaatgattactaatgt 221  Q
    ||||||||||| ||||||||||||||| | |||||||||||| ||||| |||||    
T  27131678 caacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 27131731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 7422216 - 7422153
Alignment:
Q  168 caacacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtca 231  Q
    |||||||| | |||||||||||| ||| ||||||||| |||| ||||| ||||| |||||||||    
T  7422216 caacacatataattacattcaatcacttctattttctcaaattattacaaatgtctatgtgtca 7422153  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 32358605 - 32358539
Alignment:
Q  375 ctcattataacagagg-atttatttatcttcaatttgaaaatgtcaatgactagtttggtattattt 440  Q
    |||||||||||||||| | |||||| ||  ||||||||||||||||| | |||||||||||||||||    
T  32358605 ctcattataacagagggacttatttgtccccaatttgaaaatgtcaagggctagtttggtattattt 32358539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 18542218 - 18542264
Alignment:
Q  170 acacatgtgattacattcaattactactattttcttaaatgattact 216  Q
    |||||||||||||||||||||||||  |||||||| |||| ||||||    
T  18542218 acacatgtgattacattcaattacttgtattttctcaaattattact 18542264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 12976658 - 12976706
Alignment:
Q  168 caacacatgtgattacattcaattactactattttcttaaatgattact 216  Q
    ||||||||||||||||||||| | |||  ||||||||||||| ||||||    
T  12976658 caacacatgtgattacattcattgacttttattttcttaaattattact 12976706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 28735820 - 28735887
Alignment:
Q  170 acacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtcattgtcgt 238  Q
    |||||| | |||||||||||| ||| |||||||||||||| ||||| | ||| ||||||||| ||||||    
T  28735820 acacatataattacattcaatcacttctattttcttaaattattac-agtgtctatgtgtcagtgtcgt 28735887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 38713375 - 38713335
Alignment:
Q  269 caatttagtctctcacaattttatcacggtctaatttaatc 309  Q
    ||||||| ||||||||||||||||||||||| |||| ||||    
T  38713375 caatttaatctctcacaattttatcacggtccaattcaatc 38713335  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 2468478 - 2468531
Alignment:
Q  168 caacacatgtgattacattcaattactactattttcttaaatgattactaatgt 221  Q
    ||||||||||| ||||||||||||||| | |||||||||||| ||||| |||||    
T  2468478 caacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 2468531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 10338655 - 10338607
Alignment:
Q  176 gtgattacattcaattactactattttcttaaatgattactaatgttta 224  Q
    ||||||||||||||| ||| |||||||||||||| ||||  ||||||||    
T  10338655 gtgattacattcaatcacttctattttcttaaattattatcaatgttta 10338607  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 36552252 - 36552325
Alignment:
Q  167 acaacacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtcattgtcgtat 240  Q
    |||||||| |||||| ||||||| || | || |||| || |||||||||| |||| ||||||||||||||||||    
T  36552252 acaacacacgtgatttcattcaagtatttctgttttttttaatgattacttatgtctatgtgtcattgtcgtat 36552325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 2445459 - 2445500
Alignment:
Q  174 atgtgattacattcaattactactattttcttaaatgattac 215  Q
    ||||||||||||||||| ||| | ||||||||||||||||||    
T  2445459 atgtgattacattcaatcacttccattttcttaaatgattac 2445500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 18992471 - 18992512
Alignment:
Q  180 ttacattcaattactactattttcttaaatgattactaatgt 221  Q
    |||||||||||||||| |||||||| |||| |||||||||||    
T  18992471 ttacattcaattactattattttctaaaattattactaatgt 18992512  T

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