View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_low_4 (Length: 446)
Name: NF18729_low_4
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_low_4 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 45447879 - 45448295
Alignment:
| Q |
13 |
aaaattcagatttgaagccttgtcaaatgagcttgaatctcactctcaaaaattagctcgtaagatgaaggtgcacatgacacatatgcacacagcacat |
112 |
Q |
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| T |
45447879 |
aaaattcagatttgaagccttgtcaaatgagcttgaatctcactctcaaaaattagctggtaagatgaaggtgcaca-gacacatatgcacacagcacat |
45447977 |
T |
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| Q |
113 |
tgcacaacttaggaacactgtcaatgtgggattcgaattcaacttcaatacttataatttttatacgttttcaggactaaattgaagagagtgtgataat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45447978 |
tgcacaacttaggaacactgtcaatgtgggattcgaattcaacttcaatacttataatttttatacgttttcaggactaaattgaagagagtgtgataat |
45448077 |
T |
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| Q |
213 |
ttaagaactaaattgatggtttattcttagactctagtgatgaacaaggaaagttgtaatatattttatgtattacgttataaatgattttatctaggtc |
312 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45448078 |
ttaagaaataaattgatggtttattcttagactctagtgatgaacaaggaaagttgtaatatattttatgtattacgttataaatgattttatctaggtc |
45448177 |
T |
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| Q |
313 |
aggccaaagacaataaggaagggttaattgttttacacaatgttttaaaaactgaaccaaactagacagttcaattgcttgaatcgtgaatcagcactgt |
412 |
Q |
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| T |
45448178 |
aggccaaagacaataaggaagggttaattgttttacacaatgttttaaaaactgaaccaaactagacagttcaattgcttgaatcgtgaatcagcactgt |
45448277 |
T |
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| Q |
413 |
ccactgttaggttatttg |
430 |
Q |
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| T |
45448278 |
ctacagttaggttatttg |
45448295 |
T |
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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 113410 - 113332
Alignment:
| Q |
161 |
tacttataatttttatacgttttcaggactaaattgaagagagtgtgataatttaagaactaaattgatggtttattct |
239 |
Q |
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| T |
113410 |
tacttattatttttatatactttctggactaaattgaagagaaagtgacacttaaagaactgaattgatggtatattct |
113332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 11626930 - 11626980
Alignment:
| Q |
188 |
actaaattgaagagagtgtgataatttaagaactaaattgatggtttattc |
238 |
Q |
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| T |
11626930 |
actaaattgaagagagagtgatactttaggagctacattgatggtttattc |
11626980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 42403399 - 42403345
Alignment:
| Q |
187 |
gactaaattgaagagagtgtgataatttaagaactaaattgatggtttattctta |
241 |
Q |
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| T |
42403399 |
gactaaattggagagagagtgatagtttagggactaaattgttggtttattctta |
42403345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 37080376 - 37080428
Alignment:
| Q |
186 |
ggactaaattgaagagagtgtgataatttaagaactaaattgatggtttattc |
238 |
Q |
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| T |
37080376 |
ggactaaattgaagagggagtgataatttgaagattaaattgatggtttattc |
37080428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 2886296 - 2886248
Alignment:
| Q |
190 |
taaattgaagagagtgtgataatttaagaactaaattgatggtttattc |
238 |
Q |
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|||||||||| ||| |||||| |||||| |||| ||||||||||||||| |
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| T |
2886296 |
taaattgaagggagagtgatagtttaaggactatattgatggtttattc |
2886248 |
T |
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