View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_low_6 (Length: 398)
Name: NF18729_low_6
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 39300318 - 39299939
Alignment:
| Q |
1 |
gatattcatgttgaaaaagacagagtcccaaagatgacaactcattttgaacaacttacagtggtagacaaggaaccaccacatggtagcattgaagcat |
100 |
Q |
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| T |
39300318 |
gatattcatgttgaaaaagacagagtcccaaagatgactacccattttgaacaacttacagtggtagacaaggaaccaccacatggtagcattgaagcat |
39300219 |
T |
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| Q |
101 |
tacaaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagaggaagatcaagagagactcatgaacttggttcaaatgt |
200 |
Q |
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| T |
39300218 |
tacaaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagaggaagatcaagagagactcatgaacttggttcaaatgt |
39300119 |
T |
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| Q |
201 |
gaagcagagtgatagggatcatcatcatgctgctgctaccaaccttggacacaaacaaggttttcagtctcactctgatcaaaatgtgaaacagagtgag |
300 |
Q |
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| T |
39300118 |
gaagcagagtgatagggatcatcatcatgctgctgctacgaaccttggtcacaagcaaggttttcagtctcactctgatcaaaatgtgaaacagagtgag |
39300019 |
T |
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| Q |
301 |
agggatcgtcatcatgctacaaatgtagttggacacagacaaggtgcagaaggcatgaaagaaagaggtgaaggtttggg |
380 |
Q |
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| T |
39300018 |
agggatcgtcatcatgctacaaatgtagttggacacagacaaggtgcagaaggcatgaaagaaagaggtgaaggtttggg |
39299939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 39299940 - 39299888
Alignment:
| Q |
145 |
ggagatattggtggaagaggaagatcaagagagactcatgaacttggttcaaa |
197 |
Q |
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| T |
39299940 |
ggagatattggtggaagaggaagagaaagagagagccatgaacttggttcaaa |
39299888 |
T |
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