View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18729_low_9 (Length: 385)
Name: NF18729_low_9
Description: NF18729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18729_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 43313167 - 43312849
Alignment:
| Q |
4 |
atacatgggttaataaagcccaattcctcttctctaatcttgagacaggggacattgttgcaagaggcagcataccgacactgaaggaaatgagtaaagt |
103 |
Q |
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| T |
43313167 |
atacatgggttaataaagcccaattcctcttctctaatcttgagacaggggacattgttgcaagaggcagcataccgacactgaaggaaatgagtaaagt |
43313068 |
T |
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| Q |
104 |
ttaaaagtagcaaatgtggagccttttagttaggtgcaaaagctacatagagtagcttctactgcaatcgattccaggatgaacacttgcatttgcaaat |
203 |
Q |
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| T |
43313067 |
ttaaaagtagcaaatgtggagccttttagttaggtgcaaaagctacatagagtagcttctactgcaatcgattccaggatgaacacttgcatttgcaaat |
43312968 |
T |
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| Q |
204 |
gatggactcatgtttgtcgattttcagtgcagaagcaaacatgtactaagaaaactttactatcaactccaaaatatgccgatgagagaatttgttaaag |
303 |
Q |
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| T |
43312967 |
gatggactcatgtttgtcgattttcagtgcagaagcaaacatgtactaagaaaactttactatcaactccaaaatatgccgatgagagaatttgttaaag |
43312868 |
T |
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| Q |
304 |
atttacaagttaaaataag |
322 |
Q |
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| T |
43312867 |
ttttacaagttaaaataag |
43312849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 369
Target Start/End: Complemental strand, 43312832 - 43312801
Alignment:
| Q |
338 |
aggaaagttaaaataaacttattgctgtgttc |
369 |
Q |
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| T |
43312832 |
aggaaagttaaaataaacttattgctgtgttc |
43312801 |
T |
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