View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1872_high_3 (Length: 248)
Name: NF1872_high_3
Description: NF1872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1872_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 10357923 - 10357686
Alignment:
| Q |
1 |
ttatacttcattactcctccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctatacgctgagtgagtttactgaaatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10357923 |
ttatacttcattactcctccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctatacgcagagtgagtttactgaaatat |
10357824 |
T |
|
| Q |
101 |
accacagttagctagattttttatgatatgaactagattttttcatcttcattatttaaaacaaaaagttatctactccgtttcctgattaaaagctttt |
200 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10357823 |
acaacagttagctagagtttttatgatatgaactagattttttcatcttcattatttaaaacaaaaagttatctactccgttttctgattaaaagctttt |
10357724 |
T |
|
| Q |
201 |
tgattgtgtgatgaggtcgttttcgactttcgtttctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10357723 |
tgattgtgtgatgaggtcgttttcgactttcgtttctt |
10357686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 10132298 - 10132535
Alignment:
| Q |
1 |
ttatacttcattactcctccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctatacgctgagtgagtttactgaaatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
10132298 |
ttatacttcattactcctccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaactctatacacagagtgagtttactgaaatat |
10132397 |
T |
|
| Q |
101 |
accacagttagctagattttttatgatatgaactagattttttcatcttcattatttaaaacaaaaagttatctactccgtttcctgattaaaagctttt |
200 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
10132398 |
acaacagttagctagattttttataatatgaactagattttttcatcttcattatttaaaacaaaaagttttctacttcgttttctgattaaaagctttt |
10132497 |
T |
|
| Q |
201 |
tgattgtgtgatgaggtcgttttcgactttcgtttctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10132498 |
tgattgtgtgatgaggtcgttttcgactttcgtttctt |
10132535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 10101221 - 10101333
Alignment:
| Q |
1 |
ttatacttcattactcctccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctatacgctgagtgagtttactgaaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
10101221 |
ttatacttcattactcctccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctataagcagagtgagtttactgaaatat |
10101320 |
T |
|
| Q |
101 |
accacagttagct |
113 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
10101321 |
acaacagttagct |
10101333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 10212146 - 10212258
Alignment:
| Q |
1 |
ttatacttcattactcctccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctatacgctgagtgagtttactgaaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
10212146 |
ttatacttcattactcctccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctataagcagagtgagtttactgaaatat |
10212245 |
T |
|
| Q |
101 |
accacagttagct |
113 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
10212246 |
acaacagttagct |
10212258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 10072930 - 10073054
Alignment:
| Q |
117 |
ttttttatgatatgaactagattttttcatcttcattatt---taaaacaaaaagttatctactccgtttcctgattaaaagctttttgattgtgtgatg |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||| | || | || |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10072930 |
ttttttatgatatgaactagattctttcatcttcattattctataaaaaagcaaatgatatactccgttttctgattaaaagctttttgattgtgtgatc |
10073029 |
T |
|
| Q |
214 |
aggtcgttttcgactttcgtttctt |
238 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10073030 |
aggtcgttttcgactttcgtttctt |
10073054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 10135007 - 10135128
Alignment:
| Q |
117 |
ttttttatgatatgaactagattttttcatcttcattattt--aaaacaaaaagttatctactccgtttcctgattaaaagctttttgattgtgtgatga |
214 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||| |||| ||||| | || |||||| ||| |||||||||| ||||||||||| ||||| | |
|
|
| T |
10135007 |
ttttttattatat-aactagattttttcatcttcattattctaaaaaaaaaaaatgatatactccattttctgattaaaa-ctttttgattgcgtgatca |
10135104 |
T |
|
| Q |
215 |
ggtcgttttcgactttcgtttctt |
238 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
10135105 |
gatcgttttcgactttcgtttctt |
10135128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University