View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1872_high_6 (Length: 236)
Name: NF1872_high_6
Description: NF1872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1872_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10132197 - 10131977
Alignment:
| Q |
1 |
tgtattgaacctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaatatgggaaaaga |
100 |
Q |
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| T |
10132197 |
tgtattgaacctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaataagggaaaaga |
10132098 |
T |
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| Q |
101 |
aatttttgatgactggagtcttgatcaagaaaacttcgataatttgtaatgtaaatccatatagtttataagtaagattctttcttacatgtattttaca |
200 |
Q |
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| T |
10132097 |
aattttttatgattggagtcttgatcaagaaaacttcgataatttgtaatgtaaatccatatagtttataagtaagactctttcttacatgtattttaca |
10131998 |
T |
|
| Q |
201 |
tatagttttgaaaaatttgtc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
10131997 |
tatagttttgaaaaatttgtc |
10131977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10358024 - 10358244
Alignment:
| Q |
1 |
tgtattgaacctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaatatgggaaaaga |
100 |
Q |
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| T |
10358024 |
tgtattgaacctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaataagggaaaaga |
10358123 |
T |
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| Q |
101 |
aatttttgatgactggagtcttgatcaagaaaacttcgataatttgtaatgtaaatccatatagtttataagtaagattctttcttacatgtattttaca |
200 |
Q |
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| T |
10358124 |
aatttttgatgattggagtcttgatcaagaaaacttcgataatttgtaatgtaaatccatatagtttataagtaagactctttcttacatatattttaca |
10358223 |
T |
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| Q |
201 |
tatagttttgaaaaatttgtc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
10358224 |
tatagttttgaaaaatttgtc |
10358244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 10101158 - 10101022
Alignment:
| Q |
1 |
tgtattgaacctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaatatgggaaaaga |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10101158 |
tgtattgaaactttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaataagggaaaaga |
10101059 |
T |
|
| Q |
101 |
aatttttgatgactggagtcttgatcaagaaaacttc |
137 |
Q |
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| T |
10101058 |
aatttttgatgactggagtcctgatcaagaaaacttc |
10101022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 10212083 - 10211947
Alignment:
| Q |
1 |
tgtattgaacctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaatatgggaaaaga |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10212083 |
tgtattgaaactttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaataagggaaaaga |
10211984 |
T |
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| Q |
101 |
aatttttgatgactggagtcttgatcaagaaaacttc |
137 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
10211983 |
aatttttgatgactggagtcctgatcaagaaaacttc |
10211947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 10100972 - 10100893
Alignment:
| Q |
140 |
taatttgtaatgtaaatccatatagtttataagtaagattctttcttacatgtattttacatatagttttgaaaaatttg |
219 |
Q |
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| T |
10100972 |
taatttataatgtcagttcatatagtttataagcaatactctttcttacatgtatttcacatatagtttttgaaaatttg |
10100893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 10211897 - 10211818
Alignment:
| Q |
140 |
taatttgtaatgtaaatccatatagtttataagtaagattctttcttacatgtattttacatatagttttgaaaaatttg |
219 |
Q |
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|||||| |||||| | | ||||||||||||||| || | |||||||||||||||||| |||||||||||| |||||||| |
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| T |
10211897 |
taatttataatgtcagttcatatagtttataagcaatactctttcttacatgtatttcacatatagtttttgaaaatttg |
10211818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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