View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1872_low_1 (Length: 484)

Name: NF1872_low_1
Description: NF1872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1872_low_1
NF1872_low_1
[»] chr6 (4 HSPs)
chr6 (68-468)||(10975694-10976094)
chr6 (68-106)||(16896836-16896874)
chr6 (68-106)||(18027832-18027870)
chr6 (16-48)||(10975654-10975686)
[»] chr1 (2 HSPs)
chr1 (68-109)||(21981601-21981642)
chr1 (68-99)||(21424064-21424095)
[»] chr5 (2 HSPs)
chr5 (69-108)||(22826934-22826973)
chr5 (68-108)||(18223373-18223413)
[»] chr3 (2 HSPs)
chr3 (68-108)||(12252082-12252122)
chr3 (68-107)||(30104253-30104292)
[»] scaffold0193 (1 HSPs)
scaffold0193 (68-99)||(19699-19730)
[»] chr8 (2 HSPs)
chr8 (68-99)||(20496165-20496196)
chr8 (68-106)||(23543225-23543263)
[»] chr4 (2 HSPs)
chr4 (68-99)||(28801592-28801623)
chr4 (70-99)||(9567361-9567390)
[»] scaffold0039 (1 HSPs)
scaffold0039 (68-106)||(8660-8698)


Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 68 - 468
Target Start/End: Original strand, 10975694 - 10976094
Alignment:
Q  68 aacacacataataattaattaaaataattctaccaaaaattgtactgtacatatatcatgttcaaagaaacaaaaaccgaggaaacattggattcagtaa 167  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10975694 aacacacataataattaattaaaataattctaccaaaaattaagctgtacatatatcatgttcaaagaaacaaaaaccgaggaaacattggattcagtaa 10975793  T
Q  168 aataggagttgtctattcctggagcacattggctgaagcatactacagtgtactttctaaaggaattgccttaaaaaggatatgaagcaaatcccaaatg 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10975794 aataggagttgtctattcctggagcacattggctgaagcatactacagtgtactttctaaaggaattgccttaaaaaggatatgaagcaaatcccaaatg 10975893  T
Q  268 cgtggcagaattcttcatgtccatcattaagagttatgtcaaagcttacgagtaataagtaataaagtagtaattagaggagtttatttcgcaagaacat 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10975894 cgtggcagaattcttcatgtccatcattaagagttatgtcaaagcttacgagtaataagtaataaagtagtaattagaggagtttatttcgcaagaacat 10975993  T
Q  368 caaatcgtaacaaatattaaaagatataaagtggttataggttttttcattatcacaatgtgagattagattattttgattcaaaagttaaccgcaatta 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10975994 caaatcgtaacaaatattaaaagatataaagtggttataggttttttcattatcacaatgtgagattagattattttgattcaaaagttaaccgcaatta 10976093  T
Q  468 g 468  Q
    |    
T  10976094 g 10976094  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 16896836 - 16896874
Alignment:
Q  68 aacacacataataattaattaaaataattctaccaaaaa 106  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  16896836 aacacacataataaataattaaaataattctaacaaaaa 16896874  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 18027870 - 18027832
Alignment:
Q  68 aacacacataataattaattaaaataattctaccaaaaa 106  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  18027870 aacacacataataaataattaaaataattctatcaaaaa 18027832  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 10975654 - 10975686
Alignment:
Q  16 atacacgcatagacaaatatgggctgtacaagc 48  Q
    |||||| ||||||||||||||||||||||||||    
T  10975654 atacacacatagacaaatatgggctgtacaagc 10975686  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 21981601 - 21981642
Alignment:
Q  68 aacacacataataattaattaaaataattctaccaaaaattg 109  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  21981601 aacacacataataattaattaaaataattctaacaaaaattg 21981642  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 99
Target Start/End: Original strand, 21424064 - 21424095
Alignment:
Q  68 aacacacataataattaattaaaataattcta 99  Q
    ||||||||||||||||||||||||||||||||    
T  21424064 aacacacataataattaattaaaataattcta 21424095  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 22826973 - 22826934
Alignment:
Q  69 acacacataataattaattaaaataattctaccaaaaatt 108  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  22826973 acacacataataattaattaaaataattctagcaaaaatt 22826934  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 18223413 - 18223373
Alignment:
Q  68 aacacacataataattaattaaaataattctaccaaaaatt 108  Q
    |||||||||||||| ||||||||||||||||| | ||||||    
T  18223413 aacacacataataaataattaaaataattctagcgaaaatt 18223373  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 12252122 - 12252082
Alignment:
Q  68 aacacacataataattaattaaaataattctaccaaaaatt 108  Q
    |||||||||||||||||||||||||||||||| | ||||||    
T  12252122 aacacacataataattaattaaaataattctagcgaaaatt 12252082  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 30104292 - 30104253
Alignment:
Q  68 aacacacataataattaattaaaataattctaccaaaaat 107  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  30104292 aacacacataatcattaattaaaataattctagcaaaaat 30104253  T

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Target: scaffold0193 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 99
Target Start/End: Original strand, 19699 - 19730
Alignment:
Q  68 aacacacataataattaattaaaataattcta 99  Q
    ||||||||||||||||||||||||||||||||    
T  19699 aacacacataataattaattaaaataattcta 19730  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 20496196 - 20496165
Alignment:
Q  68 aacacacataataattaattaaaataattcta 99  Q
    ||||||||||||||||||||||||||||||||    
T  20496196 aacacacataataattaattaaaataattcta 20496165  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 23543225 - 23543263
Alignment:
Q  68 aacacacataataattaattaaaataattctaccaaaaa 106  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  23543225 aacacacataataaataattaaaataattctagcaaaaa 23543263  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 99
Target Start/End: Original strand, 28801592 - 28801623
Alignment:
Q  68 aacacacataataattaattaaaataattcta 99  Q
    ||||||||||||||||||||||||||||||||    
T  28801592 aacacacataataattaattaaaataattcta 28801623  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 9567361 - 9567390
Alignment:
Q  70 cacacataataattaattaaaataattcta 99  Q
    ||||||||||||||||||||||||||||||    
T  9567361 cacacataataattaattaaaataattcta 9567390  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 8660 - 8698
Alignment:
Q  68 aacacacataataattaattaaaataattctaccaaaaa 106  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  8660 aacacacataataaataattaaaataattctagcaaaaa 8698  T

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