View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1872_low_2 (Length: 477)
Name: NF1872_low_2
Description: NF1872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1872_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 56240438 - 56240858
Alignment:
| Q |
1 |
aaagaacagaggccctacatgttaactttgatggtagtagttatccaaaatacattttcaaaattatgtaggcatggcattgaataccnnnnnnnnggca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56240438 |
aaagaacagaggccctacatgttaactttgatggtagtagttatccaaaatacattttcaaaattatgtaggcatggcattgaataccttttttttggca |
56240537 |
T |
|
| Q |
101 |
ctgaataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaagaccgactgtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56240538 |
ctgaataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaagaccgactgtgt |
56240637 |
T |
|
| Q |
201 |
tgagctgtgaaacattnnnnnnnnnnnnngataaggaatatgaaaatgtaagaaagaggagtaatgaatgcatagtaagaatttaggagaaccttagtgg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56240638 |
tgagctgtgaaacattaaacaagaaaaaagataaggaatatgaaaatgtaagaaagaggagtaatgaatgcatagtaagaatttaggagaaccttagtgg |
56240737 |
T |
|
| Q |
301 |
cagaactagtggacctaagagaaatcatcctttgagttttgattgatttgttggcagattgattgatcctgcaatgaggactaaagaaagataggagaat |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56240738 |
cagaactagtggacctaagagacatcatcctttgagttttgattgatttgttggcagattgattgatcctgcaatgaggactaaagaaagataggagaat |
56240837 |
T |
|
| Q |
401 |
tagattagatagatattatct |
421 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
56240838 |
tagattagatagattttatct |
56240858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 23946835 - 23947048
Alignment:
| Q |
1 |
aaagaacagaggccctacatgttaactttgatggtagtagttatccaaaat--ac---------attttcaaaattatgtaggcatggcattgaataccn |
89 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
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| T |
23946835 |
aaagaatagaggtcctacatgttaactttgatggtagtagttatccaaaatgaactgaattattattttcaaaattatgtaggcatgacattgaatacct |
23946934 |
T |
|
| Q |
90 |
nnnnnnnggcactgaataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaag |
189 |
Q |
| |
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|||| || ||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23946935 |
tttttttggcattggatagcttgacacctttacgaaaattatggtaaatctcgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaag |
23947034 |
T |
|
| Q |
190 |
accgactgtgttga |
203 |
Q |
| |
|
||| | |||||||| |
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|
| T |
23947035 |
acccagtgtgttga |
23947048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 298 - 421
Target Start/End: Original strand, 23947055 - 23947178
Alignment:
| Q |
298 |
tggcagaactagtggacctaagagaaatcatcctttgagttttgattgatttgttggcagattgattgatcctgcaatgaggactaaagaaagataggag |
397 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |
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|
| T |
23947055 |
tggcggaacttgtggacctaagagacatcatcctttgagttttgattgatttgttggcagatttattgatcctgcaatcaggactaaagaaagatagctg |
23947154 |
T |
|
| Q |
398 |
aattagattagatagatattatct |
421 |
Q |
| |
|
||||||||||||||||| |||||| |
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|
| T |
23947155 |
aattagattagatagattttatct |
23947178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 477
Target Start/End: Original strand, 56240890 - 56240944
Alignment:
| Q |
423 |
attgagtaagaagaatagtatactattactaactgaaatgaatgaagtgtgactt |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56240890 |
attgagtaagaagaatagtatactattactaactgaaatgaatgaagtgtgactt |
56240944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 16106109 - 16105896
Alignment:
| Q |
1 |
aaagaacagaggccctacatgttaactttgatggtagtagttatccaaaat--ac---------attttcaaaattatgtaggcatggcattgaataccn |
89 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
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|
| T |
16106109 |
aaagaatagaggtcctatatgttaactttgatggtagtagttatccaaaatgaactgaattattattttcaaaattatgtaggcatgacattgaatacct |
16106010 |
T |
|
| Q |
90 |
nnnnnnnggcactgaataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaag |
189 |
Q |
| |
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|||| || ||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
16106009 |
tttttttggcattggatagcttgacaccttttcgaaaattatggaaaatctcgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaag |
16105910 |
T |
|
| Q |
190 |
accgactgtgttga |
203 |
Q |
| |
|
||| | |||||||| |
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|
| T |
16105909 |
acccagtgtgttga |
16105896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 298 - 421
Target Start/End: Complemental strand, 16105889 - 16105766
Alignment:
| Q |
298 |
tggcagaactagtggacctaagagaaatcatcctttgagttttgattgatttgttggcagattgattgatcctgcaatgaggactaaagaaagataggag |
397 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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|
| T |
16105889 |
tggcggaacttgtggacctaagagacatcatcctttgagttttgattgatttgttggcagattgattgatcctgcaatcaggactaaagaaagatagctg |
16105790 |
T |
|
| Q |
398 |
aattagattagatagatattatct |
421 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
16105789 |
aattagattagatagatgttatct |
16105766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 16624399 - 16624287
Alignment:
| Q |
104 |
aataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaagaccgactgtgttga |
203 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||||| ||||| ||||||| ||||| ||| |||| |||||||||||||||||| || ||||||||| |
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|
| T |
16624399 |
aataccttgacacctttttgaacattatggtaaatctccacagaaagaacaacttctggatcatgcaaaggtatgtgctcctgaagtcctcctgtgttga |
16624300 |
T |
|
| Q |
204 |
gctgtgaaacatt |
216 |
Q |
| |
|
||| ||||||| |
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|
| T |
16624299 |
cctgacaaacatt |
16624287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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